New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3734346 =	NA (NA)	6 (0.160)	3/294	NT	18.2%	noncoding (23/98 nt)	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	3734395 =	27 (0.710)					noncoding (72/98 nt)	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

AGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGCCCTCGCCTTTTTGCGCGAAGAAACGACCTCCATCGCACCAAACGGGCAAGCCAGCATACAGCTTTTAC  >  CP009273/3734122‑3734668                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                  agcagcTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg                                                                                                                                                                                                                                                                                  >  1:396719/1‑275 (MQ=255)                gcCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTTACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATGTGGAGGCCGGATATAGGGTTCAcgc                                                                                                                                                                                                                                                                   >  2:47374/1‑275 (MQ=255)                    gAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACNCATCAATGNATGCGCATGAACGACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGCAAGAATTTGTAGGCCGGATAAGGCGt                                                                                                                                                                                                                                                                         <  1:483042/265‑1 (MQ=255)                     aaaGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                                                                                                                                                                                                              <  1:69102/275‑1 (MQ=255)                                                                   ggCTGGATAAACCGTGGCCGCATACGCTTCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATGTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGAACTGTTCCGGCGTTGAGAAACGCCGGaa                                                                                                                                                                                                                >  1:447758/1‑275 (MQ=255)                                                                                                             tGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                                                                                                                                                                                                  >  1:555709/1‑183 (MQ=255)                                                                                                                 cTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                                                                                                                                                                                                              <  2:555697/183‑1 (MQ=255)                                                                                                                      tACCAGAGCCGGAGAAAATTGAGGCGGGAGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCNTAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAAGCTGCTGCCGTAGCCGATGCCGCTGCCCTTTATCGAc                                                                                                                                                             >  1:548313/1‑275 (MQ=255)                                                                                                                        actcgccctgagaAAATTGGGGCGGGGTTGAAGATTCTGGCGGAATAGATAGTAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACAt                                                                                                                                                           <  2:118774/266‑1 (MQ=255)                                                                                                                                 gagaAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGACGATGCCGCTGCACTTTCTCg                                                                                                                                                               >  1:118775/1‑262 (MQ=255)                                                                                                                                                          tataggaggaggaAATAGAAAGANAATGGGCTGAAAGTCACTAAANTTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATGGCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCtt                                                                                                                          <  2:447751/267‑1 (MQ=38)                                                                                                                                                             tGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCCGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTGGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCaa                                                                                                                       >  1:455025/1‑274 (MQ=255)                                                                                                                                                              gggggacgggaTAGAAAGGAGATGGGCTGAAAGTTCCTAAANATTGCCTGATGCGTTACGCTTATCAGGCCTACATGATTTACGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCtt                                                                                                                          <  2:455018/261‑1 (MQ=38)                                                                                                                                                                    gggtgtgaaaaGTGCCTTGGCTTAAAGGAATTAAAAATTTCCTTGTGCTCTGCGCTTTTCAGTCCTACTAGATTTCTGTAATTGATTGAATTTGGAAGAATTTGTAGGTCGGATAAGGCGTTTACGCCGCATATGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAACCGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGc                                                                                                                <  2:712755/266‑1 (MQ=255)                                                                                                                                                                          aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTccc                                                                                                         <  1:47375/275‑1 (MQ=255)                                                                                                                                                                                 gacTGGGATAAAACNCACTAAAAATTTCCTGTTGCGCTACGCTTATCAGGCCTACATGTTTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTccc                                                                                                  <  2:535912/273‑1 (MQ=255)                                                                                                                                                                                  ccTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTATCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACACGCCGGACCCGCCTccc                                                                                                  >  1:69967/1‑274 (MQ=255)                                                                                                                                                                                                                      tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAAGAGGCTGCTGCCGNAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCGCCCGCTGCCAGAACAGATAGCACATAATAGCACtaaccta                                                             >  1:623193/1‑269 (MQ=38)                                                                                                                                                                                                                           ttATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTg                                                                                                                                                                         >  1:322988/1‑162 (MQ=255)                                                                                                                                                                                                                               cAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACt                                                                                                                                                                     <  2:322982/162‑1 (MQ=255)                                                                                                                                                                                                                                  GCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAACACGTTTCaa                                                                                                                                                                                                      <  2:654433‑M1/126‑1 (MQ=255)                                                                                                                                                                                                                                  GCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCTACATCCATGCACTGCAACNCCTTTGTCg                                                                                                                                   <  1:534989‑M1/193‑1 (MQ=255)                                                                                                                                                                                                                                     TACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTCGCCGATGCCGCTGCACTTTCTCGACATCAATGCACTGCAACGCCTTTGTCGGCCAGGCTTCAACACACGCCGGACCCGTCCCCCGATGCCACCCCCACTCCCCCCTAACCGCCCCcgcctttctgctcgcaccaa                                               <  2:719499‑M1/274‑10 (MQ=255)                                                                                                                                                                                                                                      ACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGAt                                                                                                                                                                                                                                                                                >  2:5578‑M1/1‑48 (MQ=255)                                                                                                                                                                                                                                      ACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAg                                                                                                                                                                                                  >  1:654447‑M1/1‑126 (MQ=255)                                                                                                                                                                                                                                      ACATGATTTCTGCAATATATTGAATTTGGAAGAAGTGGTAGGCCGGAGAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCa                                                                                                                               >  2:534979‑M1/1‑193 (MQ=255)                                                                                                                                                                                                                                            tttCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCaa                                                                                                                                              >  2:105274/1‑172 (MQ=255)                                                                                                                                                                                                                                                tGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGcc                                                                                                                                          <  1:105275/172‑1 (MQ=255)                                                                                                                                                                                                                                                 caaattcaatatattgcagaaatcatgtaggccGGATAAGGCGTTTACGCCGCATCTGGCATaaa                                                                                                                                                                                                                                                    >  1:681841‑M2/34‑65 (MQ=255)                                                                                                                                                                                                                                                 caaattcaatatattgcagaaatcatgtaggccGGATAAGGCGTTTACGCCGCATCTGGCATAAAc                                                                                                                                                                                                                                                   >  2:243719‑M2/34‑66 (MQ=255)                                                                                                                                                                                                                                                 caaattcaatatattgcagaaatcatgtaggccGGATAAGGCGTTTACGCCGCATCTGGCATAAAc                                                                                                                                                                                                                                                   >  2:124603‑M2/34‑66 (MQ=255)                                                                                                                                                                                                                                                     ttcaatatattgcagaaatcatgtaggccGGATAAGGCGTTTACGCCGCATCTGGCATAAACaaa                                                                                                                                                                                                                                                <  2:681827‑M2/36‑1 (MQ=255)                                                                                                                                                                                                                                                     ttcaatatattgcagaaatcatgtaggccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAg                                                                                                                                                                                                                                               <  1:124604‑M2/37‑1 (MQ=255)                                                                                                                                                                                                                                                     ttcaatatattgcagaaatcatgtaggccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAg                                                                                                                                                                                                                                               <  1:243722‑M2/37‑1 (MQ=255)                                                                                                                                                                                                                                                               ttGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCACATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCg                                                                                                                                                               >  1:472949/1‑136 (MQ=255)                                                                                                                                                                                                                                                                 ggAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                                                                                                                                                                                                             >  2:179986/1‑40 (MQ=40)                                                                                                                                                                                                                                                                 ggAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAATCAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGCTGCCAGCAAAGAACGCACTGAATCGCCCTCGCCTTTTTGCGCGAAGAAAGGAACCCCATCGCACCAAACGGGCAAgt                   >  2:202212/1‑273 (MQ=255)                                                                                                                                                                                                                                                                 ggAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTtc                                                                                                                                                                  >  1:359387/1‑131 (MQ=255)                                                                                                                                                                                                                                                                 ggAAGAATTTGTAGGCCGGATAAGGCGTATACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGNTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGCCCTCGCCTTTTTGCGCGAAGAAACGACCTCCATCGCACCAAACGGGCAAGcc                  >  1:512562/1‑275 (MQ=255)                                                                                                                                                                                                                                                                   aagaaTTTGTAGGCCGGATAAGGCGTTTACGCCACATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGATGCCGTAGCCGATGCCGCTGCACTTTCTCGACAt                                                                                                                                                           <  2:472941/136‑1 (MQ=255)                                                                                                                                                                                                                                                                     gaaTTTGTAGGCCGTATAAGGCGGTTACGCCTGCTCTGACATAAAAAAAGCGCAATGTTCCGGCGGTGAGAGACGCCGGAAAACGTTTCAAACAGGCTGCTGCTGTAGCCGATGCCGCTGCACTTTCTCGa                                                                                                                                                              <  2:359381/131‑1 (MQ=255)                                                                                                                                                                                                                                                                     gaaTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGc                                                                                                                                                                                                                                                         <  1:179988/40‑1 (MQ=40)                                                                                                                                                                                                                                                                           gtaggccGGATAAGGCGTTTACGCCGCATCTGCCATAATCAAAGCGCACTGTTCCGGCGTTGAGAACCGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGCCCTCGCCTTTTTGCGCGAAGAAACGACCTCCATCGCACCAAACGGGCAAGCCAGCATACAg         <  1:202214‑M2/267‑1 (MQ=255)                                                                                                                                                                                                                                                                               gccGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAANAGGCTGCTNCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGCCCTCGCCTTTTTGCGCGAAGAAACGACCTCCTTCGCACCTAACGGGCAAGCCAGCATACAGCtttt    <  1:480056‑M2/272‑1 (MQ=255)                                                                                                                                                                                                                                                                                 cGGATAAGGCGTTTACGCCGCATTTGGCTCAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCAATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCGCGTCCCCCGATGNAAGCACAGATCGCACTTAATCGCCCTCGCCTTTTTGCGCGACGAAACGAACTCCAACGAACAAAACGGGCAAGCCAGAATAAACCTATTAc  >  1:509712‑M2/2‑275 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                                  AGCAGCTCTATCAGCGCCTGAAAGCACGCGGCGTGCTGATGGTGCCGGGGCACAACTTCTTCCCAGGGCTGGATAAACCGTGGCCGCATACGCATCAATGTATGCGCATGAACTACGTACCAGAGCCGGAGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTTGAGAAACGCCGGAAAACGTTTCAAACAGGCTGCTGCCGTAGCCGATGCCGCTGCACTTTCTCGACATCCATGCACTGCAACGCCTTTGTCGGGCAGGCTTCAACACAGGCCGGTCCCGTCTCCCGATGCCAGCACAGATCGCACTTAATCGCCCTCGCCTTTTTGCGCGAAGAAACGACCTCCATCGCACCAAACGGGCAAGCCAGCATACAGCTTTTAC  >  CP009273/3734122‑3734668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.