New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3959091 =	55 (1.370)	3 (0.080)	3/298	NT	7.6%	intergenic (‑101/‑30)	rhlB/trxA	ATP‑dependent RNA helicase/thioredoxin 1
	?	CP009273	3959502 =	20 (0.520)					intergenic (+52/‑275)	trxA/rho	thioredoxin 1/transcription termination factor

GGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGACCGTTGCAAAACTGAACATCGATCAAAACCCTGGCACTGCGCCGAAATATGGCATCCGTGGTATCCCGA  >  CP009273/3958820‑3959352                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                      gtgtgagttcttaaacttggggtaaatctcgaacttaatgttgtgaatggtatggcaggatcatccatgcctgtttacggtcatcgactcatgtcttttcgctgcctggtcacaggagagtacgcagaactgaaacgacaagacggattgagngacgagccagaaatctgttcacttcgcatttaagataaaacgggaagcgttggaaattacaagattcaaacttaataaggtatgtttaatacaaagtcaacactaagtaagcatgaatCACg                                                                                                                                                                                                                                                                    <  1:632000‑M1/4‑1 (MQ=255)           ttaaacttggggtaaatctcgaacttaatgttgtgaatggtatggcaggatcatccatgcctgtttacggtcatcgactcatgtcttttcgctgcctggtcacaggagagtacgcagaactgaaacgacaagacggattgagtgacgagccagaaatctgttcacttcgcatttaagataaaacgggaagcgttggaaattacaagattcaaacttaataaggaatgtttaataagaagtcaaaactaagttagaatgactCACGCCTggcca                                                                                                                                                                                                                                                            <  2:220416‑M1/12‑3 (MQ=255)                     cGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAg                                                                                                                                                                                                                                                <  1:398891/275‑1 (MQ=255)                                                                       ggCGTATATTTATGTAATCCTTTTTTTTCTATGGCTTCTACAACCTTCGGATGCATGGCGAAGTCGGAAAACTTATGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATANCAGCTTACTAGAGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGaca                                                                                                                                                                                               <  1:671738/274‑1 (MQ=255)                                                                         cGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTcc                                                                                                                                                                                                                                                       >  1:338175/1‑216 (MQ=255)                                                                             cAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCtgtg                                                                                                                                                                                                                                                   <  2:338169/216‑1 (MQ=255)                                                                               tttagtattcccTTTTTGTTCAAGGTCTTTTACAACTTTTGGATGCAGTGCGATGTCAGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTGATAGTGTGGTAGAATATAAGCTTAATATTGCTTGACGAAAGCGTATGCGGTGAAATAAAGGAAACCTTTAGTTGGTTAATGTTAAACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGATACGGATGTAc                                                                                                                                                                                      <  2:733936/266‑1 (MQ=255)                                                                                ttATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAattatt                                                                                                                                                                                                                        >  1:651053/1‑240 (MQ=255)                                                                                 tATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCCTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAACTGTG‑TTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACAAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGATTTGACACGNATGTattta                                                                                                                                                                                   >  2:270612/1‑271 (MQ=255)                                                                                  aTGAAACCCTTTTTTGTCAAGGGCTTCTCCAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGNAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACTTGACTGACGACAGTTTTGACACGGATGTACTCa                                                                                                                                                                                   >  1:499330/1‑275 (MQ=255)                                                                                    gAACCCCGTTTTTTTCAATGGCTTCTACAATCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCAcc                                                                                                                                                                                                                    <  2:651039/240‑1 (MQ=255)                                                                                        cccTTTTTTTCCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGAAATTTTTAACACGGAAAAACTAAAAGCga                                                                                                                                                                             >  1:733950/1‑274 (MQ=255)                                                                                                         attcaccAACCTTCTGATCCAGGCCGATTCCGTAAAACTTATGTTCTTTTTACTTTGTTTTGTGCATAGTGGGTTTGATGATCTGCTTCCTTTTCCTTTACGAACGCGTATCCGGTTAAATAAAGTCAACCTTTTGTTGGTTAATGTTCCACCAACAACGCACCCACCACTCGAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTCACGACAGTTTGGACACGGATGTACTCAAAGCGGACGGCTCGATCCtcgtc                                                                                                                                                            <  2:160876/269‑1 (MQ=255)                                                                                                                  ccTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAATCACGAAACCAANACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACAGGGCGATCCTCGTCGATTTCTgg                                                                                                                                                   >  1:685637/1‑275 (MQ=255)                                                                                                                               ggCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCtgt                                                                                                                                                                                                                                                    >  2:23349/1‑165 (MQ=255)                                                                                                                                   aaGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAg                                                                                                                                                                                                                                                <  1:23350/165‑1 (MQ=255)                                                                                                                                                                   gaaatcggttcacttcgcatttaagataaaacgggaagcgttggaaattacaagattcaaacttaataaggtatgtttaatacgaagtcaacactaagttagcatgactCACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTgacga                                                                                                                                                                                                          <  1:536249‑M1/62‑1 (MQ=255)                                                                                                                                                                       tctgttcacttcgcatttaagataaaacgggaagcgttggaaattacaagattcaaacttaataaggtatgtttaatacgaagtcaacactaagttagcatgactCACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGt                                                                                                                                                                                                      >  2:536239‑M1/106‑171 (MQ=255)                                                                                                                                                                            cgtgtGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCt                                                                                                                                                                                                                                                      >  2:184294/2‑118 (MQ=255)                                                                                                                                                                            aGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCtt                                                                                                                                                                                                                                                            >  2:161256/1‑112 (MQ=255)                                                                                                                                                                            aGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCt                                                                                                                                                                                                                                                      >  2:709882/1‑118 (MQ=255)                                                                                                                                                                                tgGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTc                                                                                                                                                                                                                                                        <  1:161258/112‑1 (MQ=255)                                                                                                                                                                                tgGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTgg                                                                                                                                                                                                                                                  <  1:709896/118‑1 (MQ=255)                                                                                                                                                                                tgGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTgg                                                                                                                                                                                                                                                  <  1:184296/118‑1 (MQ=255)                                                                                                                                                                                 ggTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCa                                                                                                                                                                                                                                                                 >  2:76674/1‑102 (MQ=255)                                                                                                                                                                                 ggTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGc                                                                                                                                                                                                                                                              >  2:551692/1‑105 (MQ=255)                                                                                                                                                                                 ggTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAg                                                                                                                                                                                >  1:349467/1‑183 (MQ=255)                                                                                                                                                                                     gAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACTAACACGCCAGGCTTAt                                                                                                                                                                                                                                                          <  1:551703/105‑1 (MQ=255)                                                                                                                                                                                     gAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCt                                                                                                                                                                                                                                                             <  1:76675/102‑1 (MQ=255)                                                                                                                                                                                     gAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGa                                                                                                                                                                            <  2:349461/183‑1 (MQ=255)                                                                                                                                                                                      aaTATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAATTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACctgact                                                                                                                                                                                                               >  1:714325/1‑147 (MQ=255)                                                                                                                                                                                        tatCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAAGGATCTCCCCGATTCGGTNTTAAATCTCTAACGGattttatatca                                                                             >  2:477315/1‑266 (MQ=255)                                                                                                                                                                                          tCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAAAGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGTGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTATGGATGAAATCGCTGACGAATATCAGGGCaaa                                                                           >  1:245029/1‑275 (MQ=255)                                                                                                                                                                                             gCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTcc                                                                                                                                                                                                                                                       >  2:135393/1‑100 (MQ=255)                                                                                                                                                                                             gCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTc                                                                                                                                                                                                                                                        >  2:597255/1‑99 (MQ=255)                                                                                                                                                                                               ttACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGAc                                                                      <  1:215997/275‑1 (MQ=255)                                                                                                                                                                                               aaacgggaagcgttggaaattacaagattcaaacttaattatgtatgtttaatacgaagtaaacactaagttagcatgactCACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGAc                                                                      >  2:334890‑M1/82‑275 (MQ=255)                                                                                                                                                                                                tACTATTGCTTTACGAAAGCGTATCCGGTGCAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGCAACCAACACGCCCGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGATTGTCAGGTCAAGCTGAcg                                                                     >  2:512353/1‑274 (MQ=255)                                                                                                                                                                                                 aCTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCtgtg                                                                                                                                                                                                                                                   <  1:135394/100‑1 (MQ=255)                                                                                                                                                                                                 aCTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCtgt                                                                                                                                                                                                                                                    <  1:597268/99‑1 (MQ=255)                                                                                                                                                                                                  tttttgttgtttgAAAGCGGATCTGAGGAAATAAAGTTATCCTNTAGTTGGTTAATGTTACACAAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCAGACTGACGACAGTGTTGACACGGATGTACGCAAAGAGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGAc                                                                      <  2:469484/260‑1 (MQ=255)                                                                                                                                                                                                  cTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGa                                                                                                                                                                                                                                      >  1:145886/1‑112 (MQ=255)                                                                                                                                                                                                      ttcTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGACCGTTGCa                                                               <  1:270616/273‑1 (MQ=255)                                                                                                                                                                                                      tGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCgt                                                                                                                                                                                                                                  <  2:145885/112‑2 (MQ=255)                                                                                                                                                                                                        cTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCg                                                                                                                                                                                                                                   >  1:267572/1‑109 (MQ=255)                                                                                                                                                                                                           tACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGa                                                                                                                                                                                                                                      >  2:267140/1‑103 (MQ=255)                                                                                                                                                                                                           tACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACctgactg                                                                                                                                                                                                              >  2:371160/1‑127 (MQ=255)                                                                                                                                                                                                            aCGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATaa                                                                                                                                                                                                                               <  2:267568/109‑1 (MQ=255)                                                                                                                                                                                                             cGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAaca                                                                                                                                                                                                                                                                      >  1:458157/1‑69 (MQ=255)                                                                                                                                                                                                             cGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTCTATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGAATTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATAACAGGGCAAACTGACCGTTGCCAAACTg                                                         >  1:383856/1‑274 (MQ=255)                                                                                                                                                                                                               aaaGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGa                                                                                                                                                                                                                                  <  1:267144/103‑1 (MQ=255)                                                                                                                                                                                                               aaaGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTgacga                                                                                                                                                                                                          <  1:371167/127‑1 (MQ=255)                                                                                                                                                                                                                 aGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGcc                                                                                                                                                                                                                                                                  <  2:458150/69‑1 (MQ=255)                                                                                                                                                                                                                              aaaTAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGt                                                                                                                                >  2:142048/1‑186 (MQ=255)                                                                                                                                                                                                                                  aaaGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCaa                                                                                                                            <  1:142049/186‑1 (MQ=255)                                                                                                                                                                                                                                                              cacCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACgg                                                                                                                                                                                            >  1:195730/1‑94 (MQ=255)                                                                                                                                                                                                                                                              cacCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGACCGTTGCAAAACTGAAAATCGACCAAAACCCTGGCACTGCGCCGAAATATCACATCCGtttt         >  2:620300/1‑270 (MQ=255)                                                                                                                                                                                                                                                                  aacaacGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGt                                                                                                                                                                                        <  2:195728/94‑1 (MQ=255)                                                                                                                                                                                                                                                                    caacGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTNACACGGATNTACTCAAAGCGGTCGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGACCGTTGCAAAACTGAACATCGATCAAAACCCTGGCACTGCGCCGAAATATGGCATCCGTGGTATCCCGa  <  1:477324/274‑1 (MQ=255)                                                                                                                                                                                                                                                                    caacGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCagag                                                                                                                                             >  2:515434/1‑135 (MQ=255)                                                                                                                                                                                                                                                                        gAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCTATCACCGTCGATTTCTGGGCAGAgtggt                                                                                                                                         <  1:515443/135‑1 (MQ=255)                                                                                                                                                                                                                                                                               acacGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCAc                                                                                                                                                                                                                     >  2:351906/1‑52 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                      GGTACCGGTTTGCGCCTGCCCGGCTACGTCACGACCCGCCAGCGTCAGCGGAAGGGCCAGTGCCTGAATGGGCGTACAGTTATGAAACCCTTTTTTTTCAAGGGCTTCTACAACCTTCGGATGCAGGGCGAAGTCGGAAAACTTCTGTTCTGTTAAATGTGTTTTGCTCATAGTGTGGTAGAATATCAGCTTACTATTGCTTTACGAAAGCGTATCCGGTGAAATAAAGTCAACCTTTAGTTGGTTAATGTTACACCAACAACGAAACCAACACGCCAGGCTTATTCCTGTGGAGTTATATATGAGCGATAAAATTATTCACCTGACTGACGACAGTTTTGACACGGATGTACTCAAAGCGGACGGGGCGATCCTCGTCGATTTCTGGGCAGAGTGGTGCGGTCCGTGCAAAATGATCGCCCCGATTCTGGATGAAATCGCTGACGAATATCAGGGCAAACTGACCGTTGCAAAACTGAACATCGATCAAAACCCTGGCACTGCGCCGAAATATGGCATCCGTGGTATCCCGA  >  CP009273/3958820‑3959352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.