New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3959091 =	55 (1.370)	3 (0.080)	3/298	NT	7.6%	intergenic (‑101/‑30)	rhlB/trxA	ATP‑dependent RNA helicase/thioredoxin 1
	?	CP009273	3959502 =	20 (0.520)					intergenic (+52/‑275)	trxA/rho	thioredoxin 1/transcription termination factor

GCTGACGAATATCAGGGCAAACTGACCGTTGCAAAACTGAACATCGATCAAAACCCTGGCACTGCGCCGAAATATGGCATCCGTGGTATCCCGACTCTGCTGCTGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACAC  >  CP009273/3959259‑3959772                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                               tcTGACGAATATCAGGGCAAACTGACCGTTGCAAAACTTACAATAGAGCAAAACCCTGGCACTGCGCCGAAATAAGGCATCCGTGGTATCCCGACTCTGCTGCGGTTCAAAAACGGGGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCGCGGCGCTAAAAAGTGGACGCCCGGCGTGAGTCATGCTAACTTTGTGTTGACTTCGTa                                                                                                                                                                                                                                                    <  2:212372/271‑1 (MQ=255)                                               aTCAAAACCCTGGCACTGCGCCGAAATATGGCATCCGTGGTATCCCGACTCTGCTGCTGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGATGCCCCGTCGCTAAAAACTNGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTAAATCTTGTAATTTCAAAAGCTTCCCg                                                                                                                                                                                                   >  1:560241/1‑275 (MQ=255)                                                  gtcagtttgccctgatattcgtcagcgatttcatccagaatcggggcgatcattttgcacggaccgcaccactctgcccagaaatcgacgaggatcgccccgtccgctttgagtacatccgtgtcaaaactgtcgtcagtcaggtgaataattttatcgctcatatataactccacaggaataagcctggcgtgAGTCATGCTAACTTAGTGTTTACTTCGTATTAAACATACATAATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGttt                                                                                                                                                                                                >  2:334890‑M2/195‑275 (MQ=255)                                                         tGGCACTGCGCCGAAATATGGCATCCGTGGTATCCCGACTCTGCTGCTGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACTCCCGGCGTGAGt                                                                                                                                                                                                                                                                              >  1:384593/1‑190 (MQ=255)                                                                      aaaTATGGCATCCGTGGTATCCCGACTCTGCTGCTGTTCAAAAACGGTGAAGGGGCGGCAACCAAAGTGGGTGCACTGTCTAAAAGTCAGTTGAAAGAGTTCATCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCACCGGCGCTAAAAACTGGACGCCCGGCGTGAGTCAt                                                                                                                                                                                                                                                                           >  2:445312/1‑180 (MQ=255)                                                                         tatGGCATCCGTGGTATCCCGACTCTGCTGCTGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACa                                                                                                                                                                          <  2:249895/274‑1 (MQ=255)                                                                          atGGCATCCGTGGTATCCCGACTCTGCTGCTGTTCCAAAACGGTGAAGTGCCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAACACTGGACGCCCGGCGTGAGTCATGCTa                                                                                                                                                                                                                                                                       <  1:445319/180‑1 (MQ=255)                                                                                                 ctgctgctgTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCg                                                                                                                                                 >  1:220418/1‑275 (MQ=255)                                                                                                              aaaaCGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCAGGCTAACTTAGTGNTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGtt                                                                                                                                       >  1:630448/1‑272 (MQ=255)                                                                                                                                             tGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTccc                                                                                                                                                                                                    >  2:221722/1‑180 (MQ=255)                                                                                                                                                 cTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGttt                                                                                                                                                                                                <  1:221724/180‑1 (MQ=255)                                                                                                                                                    tCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGtt                                                                                                                                                                                                                                                             >  2:116113/1‑116 (MQ=255)                                                                                                                                                    tCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGtt                                                                                                                                                                                                                                                             >  2:17594/1‑116 (MQ=255)                                                                                                                                                        aaGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACt                                                                                                                                                                                                                                                         <  1:116114/116‑1 (MQ=255)                                                                                                                                                        aaGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACt                                                                                                                                                                                                                                                         <  1:17594/116‑1 (MQ=255)                                                                                                                                                              ggTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATAcc                                                                                                                                                                                                                                         >  1:155354/2‑126 (MQ=255)                                                                                                                                                                  gAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCttat                                                                                                                                                                                                                                     <  2:155352/126‑1 (MQ=255)                                                                                                                                                                                  actgtcgtcagtcaggtgaataattttatcgctcatatataactccacaggaataagcctggcgtgAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGa                                                                                                                                                                        >  2:536239‑M2/67‑171 (MQ=255)                                                                                                                                                                                      tcgtcagtcaggtgaataattttatcgctcatatataactccacaggaataagcctggcgtgAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACCGATTTc                                                                                                                                                                    <  1:536249‑M2/109‑1 (MQ=255)                                                                                                                                                                                      aaatGGCGTAAGTGTATTTTATGTCTCGGTGCCCCGTCTCTAAAAACTGTACGTCCTGAGTGAGTCATTCTAACTTAGTTTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTTAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGgatga                                                              <  2:630434/270‑1 (MQ=255)                                                                                                                                                                                                                               aaaaaCTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACt                                                                                                                                                        >  2:412290/1‑142 (MQ=255)                                                                                                                                                                                                                                   aCTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAAt                                                                                                                                                    <  1:412297/142‑1 (MQ=255)                                                                                                                                                                                                                                       gACGCCCGGCGTGAGTCATGCTAACTTATGGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTCCTGTGACCAGGCAGNGAAAAGACATGAGTCGATGACCGTACACAGGCATGGATGATCCTGCCATACCATTAACAACATTAAGTTCGAGATTTACCCCAAGTTTaa            >  1:517247/1‑274 (MQ=255)                                                                                                                                                                                                                                        tggccaggcgtgAGTCATTCTAACTTAGTTTTGACTTCTTATTAAACATTCCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTaa            <  2:220416‑M2/261‑1 (MQ=255)                                                                                                                                                                                                                                        aCGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCTTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGAGGATCCTGCCATACAATTAAAAACATAAATATCGAGCTTTNTCCCAATTTTacaa          >  2:551598/1‑272 (MQ=255)                                                                                                                                                                                                                                                cgtgATTCATGCTTACTTAGTGTTGACTTTGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCNCTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCacac  <  1:632000‑M2/271‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                               GCTGACGAATATCAGGGCAAACTGACCGTTGCAAAACTGAACATCGATCAAAACCCTGGCACTGCGCCGAAATATGGCATCCGTGGTATCCCGACTCTGCTGCTGTTCAAAAACGGTGAAGTGGCGGCAACCAAAGTGGGTGCACTGTCTAAAGGTCAGTTGAAAGAGTTCCTCGACGCTAACCTGGCGTAAGGGAATTTCATGTTCGGGTGCCCCGTCGCTAAAAACTGGACGCCCGGCGTGAGTCATGCTAACTTAGTGTTGACTTCGTATTAAACATACCTTATTAAGTTTGAATCTTGTAATTTCCAACGCTTCCCGTTTTATCTTAAATGCGAAGTGAACAGATTTCTGGCTCGTCACTCAATCCGTCTTGTCGTTTCAGTTCTGCGTACTCTCCTGTGACCAGGCAGCGAAAAGACATGAGTCGATGACCGTAAACAGGCATGGATGATCCTGCCATACCATTCACAACATTAAGTTCGAGATTTACCCCAAGTTTAAGAACTCACAC  >  CP009273/3959259‑3959772

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.