New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4322057	47 (1.170)	4 (0.110)	3/288	NT	8.7%	coding (1033/1092 nt)	basS	sensory histidine kinase in two‑component regulatory system with BasR
	?	CP009273	= 4322489	40 (1.070)					coding (601/1092 nt)	basS	sensory histidine kinase in two‑component regulatory system with BasR

CCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAG  >  CP009273/4321804‑4322309                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                             ccGCGAATTGATGAATAAGCTGAAACGGATGGCGTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCCTACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAg                                                                                                                                                                                                                                         <  1:85050/275‑1 (MQ=255)                   gCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATg                                                                                                                                                                                                                       <  1:305105/275‑1 (MQ=255)                             aTGGCCTGATGTGACGCTGTCTTATCAGGCCAATCGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATGTCTGGTTTGCCANGTACTGATNTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTa                                                                                                                                                                                                             >  1:477612/1‑275 (MQ=255)                                       gtgACGCTGTCTTATCAGGCCAATTGAACGCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGa                                                                                                                                                                                                   <  1:286037/275‑1 (MQ=255)                                               gTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACt                                                                                                                                                                                            <  1:88509/274‑1 (MQ=255)                                                ttttttCATGCCAATTTAACTCTTTAGGTTCACTTAATCTCTGACTCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAANCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACtt                                                                                                                                                                                           <  1:527442/269‑1 (MQ=255)                                                          ccAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAAATGCCAGTGATGCAACTGGGTAATGAGGCGGACAATACTTAACCCCAGAcc                                                                                                                                                                                >  2:670642/1‑275 (MQ=255)                                                                                cTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGACTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCgg                                                                                                                                                                                                       >  1:407481/1‑230 (MQ=255)                                                                                              cgcATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAACAACTGCCCGTGATGCATCTGTGTAATGAGGCTGACAATACTTAACCCCAGACCAATCCCGCCATACAGGCtctc                                                                                                                                                           >  1:149085/1‑260 (MQ=255)                                                                                                cATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGAt                                                                                                                                                                                                                        >  2:624670/1‑197 (MQ=255)                                                                                                   aCTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTg                                                                                                                                                                                                                                >  1:670089/1‑186 (MQ=255)                                                                                                    ctctCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCaa                                                                                                                                                                                                                    <  1:624684/197‑1 (MQ=255)                                                                                                       tcctccAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCGCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAAt                                                                                                                                                                                               >  1:730989/1‑215 (MQ=255)                                                                                                       tcctccAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCg                                                                                                                                                                                                                            <  2:670075/186‑1 (MQ=255)                                                                                                         ctccAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAAGTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCAATCCCGCCATAACGGCTGTCCAACCGTACAAACGCTTAACTCaaa                                                                                                                                  >  1:406248/1‑273 (MQ=255)                                                                                                           ccAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACtt                                                                                                                                                                                           <  2:730975/215‑1 (MQ=255)                                                                                                                   aCGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGt                                                                                                                                                                                                                           >  1:171426/1‑175 (MQ=255)                                                                                                                       aggagAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATg                                                                                                                                                                                                                       <  2:171424/175‑1 (MQ=255)                                                                                                                         gagagaGCAATGAAAAACCGCGTTTATAAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTGTTTATATCTGATTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCACGTCATGCAACAGTGTACTGCGGCTGACCACCGTTAACTCCCAACCAATCCCGCCTTACCGGCTGGCCATCAGCACACACGCATTACTCCACTCCACTCATTAActac                                                                                                                  >  2:695215/1‑272 (MQ=255)                                                                                                                            agttctatggaaaACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAcagtcattttcttccggtaattatcaacatgtaaaactgctggaagatgtcattctcccctcgtatgacgaactcagtaccatgctcgaccagcgacagcaaaccctgctattgccagagagcgccgccgacatcaccgttcag                                                                                                              <  1:325666‑M1/269‑145 (MQ=255)                                                                                                                                cAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGTAAAACTGCCCGt                                                                                                                                                                                                                           >  1:20692/1‑162 (MQ=255)                                                                                                                                    gAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATg                                                                                                                                                                                                                       <  2:20691/162‑1 (MQ=255)                                                                                                                                      aaaaCCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAcagtcattttcttccggtaattatcaacatgtaaaactgctggaagatgtcatcctcccctcgtatgacgaactcagtaccatgctcgaacagcgacagcaacccctgccattgccagggagcgccaccgccatccccgttcagggcgctga                                                                                                      >  2:325660‑M1/1‑121 (MQ=255)                                                                                                                                        aaCCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAcagtcattttcttccggtaattatcaacatgtaaaactgctggaagatgtcattctcccctcgtatgacgaactcagtaccatgctcgaccagcgacagcaaaccctgctattgccagagagcgccgacgacatcaccgttcagggtgatgcaacc                                                                                                  >  1:602661‑M1/1‑119 (MQ=255)                                                                                                                                        aaCCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAagtcattttattccggtaattatcaacatgtaaaactgctggaagatgtcattctcacctcgtatgacgaactcagtacactgctcgaccagcgacagcaaaccctgctattgccagagagcgccgccgacatcacagttcagggtgatgcaacca                                                                                                  >  1:215824‑M1/1‑119 (MQ=255)                                                                                                                                        aaCCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGccc                                                                                                                                                                                                                             >  1:43114/1‑152 (MQ=255)                                                                                                                                            gtgtTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGa                                                                                                                                                                                                                         <  2:43113/152‑1 (MQ=255)                                                                                                                                               tttATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCACGTGATGCAACTGTGTAATGCGGCTGACAATACGTAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGAATTTACTCTCATCAATACCCGGACCTTCATc                                                                                            >  1:372568/1‑274 (MQ=255)                                                                                                                                                    gatattttAACTCCCGTGTTCAGCGTGCTGGTGGTCAGCAGTTTTCTTTTTATCTGTTTTGCCACGTCCTGATCTTTCTTCAGCCGTCCCCAGCCCCGCGTGCCGGAAGTCTCTTNCCGGTTTTGCAGGAAAAAATGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCaa                                                                                       <  1:670656/269‑1 (MQ=255)                                                                                                                                                                           cGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGt                                                                                                                                                                                                                                                >  2:615373/1‑98 (MQ=255)                                                                                                                                                                           cGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCa                                                                                                                                                                               >  2:169629/1‑163 (MQ=255)                                                                                                                                                                               cTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTg                                                                                                                                                                                                                                            <  1:615386/98‑1 (MQ=255)                                                                                                                                                                               cTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCAATcc                                                                                                                                                                           <  1:169631/163‑1 (MQ=255)                                                                                                                                                                                     gtCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAAccc                                                                                                                                                                                      >  2:61678/1‑146 (MQ=255)                                                                                                                                                                                         gcagcTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGa                                                                                                                                                                                  <  1:61679/146‑1 (MQ=255)                                                                                                                                                                                          cagcTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTaa                                                                                                                                                                                                            >  2:251074/1‑119 (MQ=255)                                                                                                                                                                                             ctttccttATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGAcc                                                                                                                                                                                >  1:231362/1‑144 (MQ=255)                                                                                                                                                                                              tttctttATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCg                                                                                                                                                                                                        <  1:251077/119‑1 (MQ=255)                                                                                                                                                                                                 ccttATATCTGGTGTCCCACGTACTGATCTTTCTCCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTGGCCGGTTTTGCAGGAAAAACGGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGCCCAATc                                                                                                                                                                            <  2:231360/142‑1 (MQ=255)                                                                                                                                                                                                                gCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACaa                                                                                                                                                                                                >  1:211074/1‑109 (MQ=255)                                                                                                                                                                                                                    cGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACt                                                                                                                                                                                            <  2:211072/109‑1 (MQ=255)                                                                                                                                                                                                                               ttcttcAGCCGTACCTAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTNGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCt                                  >  1:505033/1‑252 (MQ=255)                                                                                                                                                                                                                                tcttcAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGAt                                                                                                                                                                                                                        >  2:446711/1‑69 (MQ=255)                                                                                                                                                                                                                                    cAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCaa                                                                                                                                                                                                                    <  1:446718/69‑1 (MQ=255)                                                                                                                                                                                                                                     aGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTGAACTCTCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATAATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGGTtactac     >  1:651934/1‑275 (MQ=255)                                                                                                                                                                                                                                         gcgccaacgccctcgtgCCTCAcagtcattttcttccgcttattatcaccatgttaacctgctgtaagatgtccttctcccctcgtatgacgaactcagtaccatgctcgaccagcgacagcaaaccctgctattgccagagagcgccgccgacatcaccgttcagggtgatgcaaccctgctgcggatgttagtgcgaaacctggtagaaaacgcccatcgttacagcccgcaaggcagcaacattatgattaagctgcaagaagatgacgga  <  2:155151‑M1/266‑253 (MQ=255)                                                                                                                                                                                                                                          tACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGa                                                                                                                                                                                                                                       >  1:389235/1‑44 (MQ=255)                                                                                                                                                                                                                                          tACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTaa                                                                                                                                                                                                            >  2:139287/1‑71 (MQ=255)                                                                                                                                                                                                                                              cAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGaaaaa                                                                                                                                                                                                                                   <  2:389228/44‑1 (MQ=255)                                                                                                                                                                                                                                              cAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCg                                                                                                                                                                                                        <  1:139288/71‑1 (MQ=255)                                                                                                                                                                                                                                                 gCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTTTAATGCGGCTGACAATACTTAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCa                                                                                                                          >  1:351464/1‑146 (MQ=255)                                                                                                                                                                                                                                                     gcgTCCGGGATGTCTTTTGCCTGTTTTGCAGGAAAAACTGCCGGTGATGAAACTGTGTAATGCGGCGGAAAAAACTAAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTa                                                                                                                      <  2:351458/146‑1 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                             CCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAATCTCTGACGCGCATACTCTCCTCCAGGTTAACGGAGGAGAGTGCAATGAAAAACCGTGTTTATGAAAGTTTAACTACCGTGTTCAGCGTGCTGGTGGTCAGCAGCTTTCTTTATATCTGGTTTGCCACGTACTGATCTTTCTTCAGCCGTACCCAGGCCCGCGTGCCGGAAGTCTCTTGCCGGTTTTGCAGGAAAAACTGCCCGTGATGCAACTGTGTAATGCGGCTGACAATACTTAACCCCAGACCAATCCCGCCATAACGGCTGTCCATACGTACAAACGCTTTACTCAACTCCCCGCATTTACTCTCATCAATACCTGGTCCTTCATCTTCAACTGCCATGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAG  >  CP009273/4321804‑4322309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.