New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4322057	47 (1.170)	4 (0.110)	3/288	NT	8.7%	coding (1033/1092 nt)	basS	sensory histidine kinase in two‑component regulatory system with BasR
	?	CP009273	= 4322489	40 (1.070)					coding (601/1092 nt)	basS	sensory histidine kinase in two‑component regulatory system with BasR

TGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGCCAGTGGCGTTCGCAGTTCGTGCGCGACGTCAGCGGTAAACAACCTTTCGTTATCCAGCGTGCTGGTCAGGCGACTGACCAGATCGTTTAACGCCGAAACCACCGCTTCGATTTCGAGGGTGGCG  >  CP009273/4322231‑4322739                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                           tGACCGCTCCGTCATCTTCTTGCTGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGCTGATGGCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGt                                                                                                                                                                                                                                            <  1:652102/275‑1 (MQ=255)        tCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCACTAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAAGGACATCTTACAGCAGGTTAACATGGTGATAATAAGCGGAAGAAAATGACTGtgaggcacgagggcgttggcgc                                                                                                                                                                                                                                      <  2:155151‑M2/274‑23 (MQ=255)                cttcttGCAGCTTAATCATAATGTTGCTTCCTTGCGTGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGgag                                                                                                                                                                                                                             <  1:155152/275‑1 (MQ=255)                       agagacagtCATGATGTTGCCGCCTTGGGGGCTGTAACGAGGGGCTTTTTCTACCAGGTTTCGCAATGACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGGCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTTGTCGAGCATGGTACTGAGTTCGTCATACGATGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGct                                                                                                                                                                                                                        <  2:315424/265‑1 (MQ=255)                                          ctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATTTCGGCTGCGCCCTCTGGCAATAGCAGGGTTTGCTGTCGATGGTCGAGCATGGTACTGAGTTCGCCATACGAGTGGAGAATGACAGCTTCCAGCAGTTTTACATGTTTATAATTACCCGACGAAAATGACAGTCAGACACGCGCCAGTTGCCGCAGAGGGGCGAGACTCTCCATGATCGGATTAAgta                                                                                                                                                                                                    >  2:121177/1‑272 (MQ=255)                                          ctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCtctgtccctt                                                                                                                                                                                                    >  1:315429/1‑265 (MQ=255)                                          ctgcCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCCTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGcc                                                                                                                                                                                                    >  1:588137/1‑274 (MQ=255)                                                         tAAGGATGGGGGTTTTATACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTg                                                                                                                                                                                     <  2:588124/274‑1 (MQ=255)                                                              aTGGGCGTTTTCTACCAGGTTTGGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCGGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACAGAGTTCGTCAGACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGCGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACAt                                                                                                                                                                               <  1:695229/275‑1 (MQ=255)                                                                                                       tggtTGCATCACCCTGAACTGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCAGTGTACTGAGTTCGTCATACGAGGTGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAATAAAATGACTccggcacgcgggcctgggtacggctgaagaaagatcagtacgtggcaaaccagatataaagaaagctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtt                                                                                                                                       >  1:215824‑M2/2‑157 (MQ=255)                                                                                                        ggTTGCATCACCCTGAACGGTGATGTCGTCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGtccggcacgcgggcctgggtacggctgaagaaagatcagtacgtggcaaaccagatataaagaaagctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtt                                                                                                                                     >  1:602661‑M2/1‑156 (MQ=255)                                                                                                            tcagcgccctgaacgGGGATGGCGGTGGCGCTCCCTGGCAATGGCAGGGGTTGCTGTCGCTGTTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGGATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGtccggcacgcgggcctgggtacggctgaagaaagatcagtacgtggcaaaccagatataaagaaagctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggtttt                                                                                                                                   >  2:325660‑M2/7‑152 (MQ=255)                                                                                                                cACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGtt                                                                                                                                                                                                                                           >  1:241529/1‑165 (MQ=255)                                                                                                                   ccTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGt                                                                                                                                                                                      >  1:558267/1‑215 (MQ=255)                                                                                                                    cTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGtccggcacgcgggcctgggtacggctgaagaaagatcagtacgtggcaaaccagatataaagaaagctgctgaccaccagcacgctgaacacggtagttaaactttcataaacacggttttccatagaact                                                                                                                         <  1:325666‑M2/275‑132 (MQ=255)                                                                                                                    cTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTgcag                                                                                                                                                                                                                                       <  2:241526/165‑1 (MQ=255)                                                                                                                       aaCGGTGTTGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTa                                                                                                                                                                                  <  2:558255/215‑1 (MQ=255)                                                                                                                            tGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGCCAGTGGCGTTCGc                                                                                                                 >  1:304753/1‑275 (MQ=255)                                                                                                                            tGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGCAAGTGGCGTTCGc                                                                                                                 >  1:72357/1‑275 (MQ=255)                                                                                                                                          ctctctGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACCGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAAACGCGCTCCATCATCTGATCAAACCGTCCCACCAACGGTGCTCCATCACTGTGATGCGTTTTCGCCCGCAGTTCCAGCTACCAACACAGCCCCGCCCTTGGCGTTGGCATTTctttcccca                                                                                                    >  2:501370/1‑266 (MQ=255)                                                                                                                                                            gtgtgcggtanttGGTCGGGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGCCAGTGGCGTTCGCAGTTCGTGCGCGACGTCAGCGGTAAACAAcc                                                                                  <  2:72356/262‑1 (MQ=255)                                                                                                                                                                  tGTCGTTGGTGGATCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACNGGAAGAAANTGACTGTCCGGCTCGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGGGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGCCAGTGGCGTTCGCAGTTAGTGCGCCACGTCAGCGGTAAACAACCTTTCGtt                                                                           <  1:490418/275‑1 (MQ=255)                                                                                                                                                                      gCTGGTCGAGCATGGTACTGAGTTAGTCATACGAGGGGAGAATGACAGATTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGACAGTTGCAGCAGCTGGGAGACGATATCCATCAACTGATCAAGCCGTTCCACTAACGGTGCTACATCAATGTGATGCGtg                                                                                                                                                                 >  1:715127/1‑184 (MQ=255)                                                                                                                                                                                    gTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGct                                                                                                                                                                                                                        >  2:421707/1‑116 (MQ=255)                                                                                                                                                                                        tGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTcc                                                                                                                                                                                                                    <  1:421714/116‑1 (MQ=255)                                                                                                                                                                                          aGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCAccc                                                                                                                                  >  2:90979/1‑196 (MQ=255)                                                                                                                                                                                              cGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGc                                                                                                                              <  1:90980/196‑1 (MQ=255)                                                                                                                                                                                               gTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCTAg                                                                                                                                                                                                      >  1:551053/1‑123 (MQ=255)                                                                                                                                                                                               gTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCaaa                                                                                                                                         >  2:308715/1‑184 (MQ=255)                                                                                                                                                                                                   tACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCCAGCCGt                                                                                                                                                                                                  <  2:551042/123‑1 (MQ=255)                                                                                                                                                                                                   tACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCa                                                                                                                                     <  1:308720/184‑1 (MQ=255)                                                                                                                                                                                                         gggAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCAc                                                                                                                                                                                             >  2:225400/1‑122 (MQ=255)                                                                                                                                                                                                             gaATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAAc                                                                                                                                                                                         <  1:225402/122‑1 (MQ=255)                                                                                                                                                                                                              aaTGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCa                                                                                                                                                                                              >  1:205191/1‑116 (MQ=255)                                                                                                                                                                                                              aaTGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGAAGCGTTTTGGCCANCAGTTCCAGATGCAAACGCACCCCCGCCAGTGGCGTTCGCAGTTCGTGCGCGACGTCAGCGGTAAACAACCTTTCGTTATCCAGCGTGCTGGTCAGGCGACTGACCAGATCGGTTaaaggcg                               >  1:629516/1‑270 (MQ=255)                                                                                                                                                                                                                  aCATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTaa                                                                                                                                                                                          <  2:205189/116‑1 (MQ=255)                                                                                                                                                                                                                    aTCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGgaga                                                                                                                                                                                                                            >  2:397739/1‑80 (MQ=255)                                                                                                                                                                                                                    aTCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAg                                                                                                                                                                                                      >  1:128139/1‑102 (MQ=255)                                                                                                                                                                                                                        tCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGct                                                                                                                                                                                                                        <  1:397746/80‑1 (MQ=255)                                                                                                                                                                                                                        tCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGt                                                                                                                                                                                                  <  2:128138/102‑1 (MQ=255)                                                                                                                                                                                                                                ttttACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCt                                                                                                                                                                                                             >  2:350326/1‑83 (MQ=255)                                                                                                                                                                                                                                    aCATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATc                                                                                                                                                                                                         <  1:350332/83‑1 (MQ=255)                                                                                                                                                                                                                                           gATAATTACCGGAAGAATATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGNGCCACTAANGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGCCAGTGGCGTTCGCAGTTCGTGCGCGACGTCAGCGGTAAACAACCTTTCGTTATCCAGCGTGCTGGTCAGGCGACTGACCAGATCGTTTAACGCCGAAACCACCGCTTCGATTTCGAGGGTGgcg  <  1:481942/275‑1 (MQ=255)                                                                                                                                                                                                                                                  aCCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCca                                                                                                                                                                                                                   >  1:274475/1‑59 (MQ=255)                                                                                                                                                                                                                                                      gaagaaAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCcatcat                                                                                                                                                                                                               <  2:274471/59‑1 (MQ=255)                                                                                                                                                                                                                                                            aaTGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCACTCCATCATCTGATCAAGCCGTTCCACTAACGGCGCTACATCCATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCCCCCCCGc                                                                                                                              >  2:49939/1‑134 (MQ=255)                                                                                                                                                                                                                                                                ccTGTCCGGCACGCGCCAGTGGCAGAAGCTGGGAGACGCGTTCCATCATCTGATCAAGCGGTGCCACTAACGGAGGGACATCAATGTGATGCGTTTGCGCCAGCAGTGCCAGTTGCAAACGCACCCCCGCCAGt                                                                                                                          <  1:49940/133‑1 (MQ=255)                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                           TGACCGCTCCGTCATCTTCTTGCAGCTTAATCATAATGTTGCTGCCTTGCGGGCTGTAACGATGGGCGTTTTCTACCAGGTTTCGCAATAACATCCGCAGCAGGGTTGCATCACCCTGAACGGTGATGTCGGCGGCGCTCTCTGGCAATAGCAGGGTTTGCTGTCGCTGGTCGAGCATGGTACTGAGTTCGTCATACGAGGGGAGAATGACATCTTCCAGCAGTTTTACATGTTGATAATTACCGGAAGAAAATGACTGTCCGGCACGCGCCAGTTGCAGCAGCTGGGAGACGCTCTCCATCATCTGATCAAGCCGTGCCACTAACGGTGCTACATCAATGTGATGCGTTTTCGCCAGCAGTTCCAGATGCAAACGCACCCCCGCCAGTGGCGTTCGCAGTTCGTGCGCGACGTCAGCGGTAAACAACCTTTCGTTATCCAGCGTGCTGGTCAGGCGACTGACCAGATCGTTTAACGCCGAAACCACCGCTTCGATTTCGAGGGTGGCG  >  CP009273/4322231‑4322739

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.