New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 272148	NA (NA)	7 (0.190)	3/290	NT	11.3%	noncoding (387/429 nt)	IS911	repeat region
	?	CP009273	= 272562	55 (1.460)					coding (137/933 nt)	mmuM	CP4‑6 prophage; S‑methylmethionine:homocysteine methyltransferase

AAGTAGGGATCCCGTACGCCGCTGATATTTTTAACTTCGTGATCCTGACGGCTATTCTTTCTGCAGCGAACTCCGGGTTATATGCCTCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTTTGTTGCGTTGTGCTATGGTGCTTATTTCCTTACTCAACCCCGAAACGCA  >  CP009273/271877‑272409                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                      aaGTCGGGATCCCGTACTCCGCTGATATTTTTAACTTCGTGGTCCTGACGTCTATTCTTTCTGCAGCGAACTCCGGGTTATATGCCTCCGGGCGCATGCTGTGGTCGTTGTCGGAGGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGc                                                                                                                                                                                                                                                                     <  2:674972/274‑1 (MQ=255)       ggATCCCGTACGCTGCTTATATTTTTAACTTTGTGAGCCTGACGTCTATTCTTTCTGCAGCGAACTCCGGGTTATATGCCTCCGGGCGCATGCTGTGTTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGGGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGATTGCggtggt                                                                                                                                                                                                                                                               <  1:720275/274‑1 (MQ=255)                    cgcTGATATTTTTATCTTCGTGATCCTGACGGCTATTCTTTCTGCAGCGAACTCCGGGTTATAGTCCTCCGGGCGCATGCTGGGGTCTTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTg                                                                                                                                                                                                                                                  <  1:397338/274‑1 (MQ=255)                                      cGTGATCCTGACGGCTATTCTTTCTGCAGCGAACTCCGGGTTATATGCCTCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGGGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGTGCTGTTTTCTAGCGTGGTGGCCCCGGACACGGTCGTTGTGGCGTTGTCGGCAATCTCCGGGTTTGCGGGGGTCGCGGTGTGGCTGAGGAGCTGCGCCgcgcct                                                                                                                                                                                                                                >  1:448637/1‑272 (MQ=255)                                                                   cGAACTCCGGGTTATATGCCTCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTtc                                                                                                                                                                                                                      >  1:81207/1‑255 (MQ=255)                                                                      tgtCCGGGTTAGATGCGTCCGGGGGGATGTTGTTGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGGAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCCTCGCCGTCATCTGCAACAAGGt                                                                                                                                                                                               <  1:138199/273‑1 (MQ=255)                                                                                atatGCCTCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGNGCTGGCGCTGTTTGCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGa                                                                                                                                                                                     <  1:626147/275‑1 (MQ=255)                                                                                    gCCTCCGGGCGTATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCATGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTg                                                                                                                                                                                  <  1:701330/274‑1 (MQ=255)                                                                                      cTCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTGGCGGTGTGGGTGAGTATCTGCGGCTCGCATTTTGTTTTTCGTGGCCGTCTTCTGCAAACAGGTAAGGGCTTGGGTGaa                                                                                                                                                                                >  2:701316/1‑274 (MQ=255)                                                                                       tCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCggtg                                                                                                                                                                                                                                                                 >  1:40115/1‑192 (MQ=255)                                                                                       tCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTGGCGGTGTGGCTGCGTAACTGCGCCTGGCATTTTGTTTTTCGTCGCCGTCACTTGCACAAAGGTAAGGCATTGAGGGAAt                                                                                                                                                                               >  1:188971/1‑274 (MQ=255)                                                                                        ccGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGACAATCTCCGGGTTT                                                                                                                                                                                                                                                                       >  1:464281‑M1/1‑185 (MQ=255)                                                                                          gggTGCTTGCTTTGGTCTTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCNCTGACGGCNCTGTCGGTCAGTCTGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATTTGCAACAAGGTAAGGCATTGAGTGaa                                                                                                                                                                                <  1:489200/270‑1 (MQ=255)                                                                                           ggCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAg                                                                                                                                                                                                                                                             <  2:40114/192‑1 (MQ=255)                                                                                            gcgcATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCgg                                                                                                                                                                                                                                                                   <  2:464274/185‑1 (MQ=255)                                                                                                    tgtgGTGTTTGTCGGAGGACCGTTCGCTACCGGCTTGTTGTGCGCGAGTAACGAAAAACGGCGTGCCACGGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGGGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATcgcgcg                                                                                                                                                                 <  1:154703/275‑1 (MQ=255)                                                                                                        gTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCCCGGTGGTGTGCTGGCGCTGTTTTCAAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCTTTTTGTTTTTCGTCGCGGTCGTCTGCAACAAGGAAAGGCATTGGGTGAATTCCATTCTCGCGCTCCgg                                                                                                                                                             >  2:643347/1‑274 (MQ=255)                                                                                                          cGTTGTCGAATGAACGGACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCGCGGTGGTGTGCTGGCGATGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTAGTCGCCGTCATCTGcaaca                                                                                                                                                                                                   <  1:583862/235‑1 (MQ=255)                                                                                                                cGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCCCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGTACACGCTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCg                                                                                                                                                     <  1:643361/275‑1 (MQ=255)                                                                                                                 gAATGAACTTGCGGTGCCGGCTTGTTTTGCGCGGTGAACGAGATACGGTGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCg                                                                                                                                                     <  1:51145/274‑1 (MQ=255)                                                                                                                               accgggataactttGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCATGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTACGGGTTTGCGGGGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACACTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTa                                                                                                                                      >  1:206289/12‑275 (MQ=255)                                                                                                                                 ccGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTCGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTtc                                                                                                                                                                                                                      >  2:545619/1‑193 (MQ=255)                                                                                                                                   ggCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGAGGTAGCGGTGTGGCTGAGTATCTgcg                                                                                                                                                                                                                                        >  1:675385/1‑173 (MQ=255)                                                                                                                                     ccTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTtcgtcg                                                                                                                                                                                                                  <  1:545630/193‑1 (MQ=255)                                                                                                                                       tGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTc                                                                                                                                                                                                                                    <  2:675371/173‑1 (MQ=255)                                                                                                                                         ttttGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGGATTGGGTTTtgtgc                                                                                                                            >  1:19230/1‑275 (MQ=255)                                                                                                                                               gcgAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTtctaccagcactttggctgaccacaggctgtcggctaagttacaccc                                                                                                                                                                                                                        >  1:601485‑M1/1‑130 (MQ=255)                                                                                                                                               gcgAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTtctaccagcactttggctgaccacaggctgt                                                                                                                                                                                                                                        >  1:191123‑M1/1‑130 (MQ=255)                                                                                                                                               gcgAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTtctaccagcactttggctgaccacaggctgt                                                                                                                                                                                                                                        >  1:712546‑M1/1‑130 (MQ=255)                                                                                                                                                   gTAACGAAAAACGGCGTGCCACTGACGTCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTtctaccagcactttggctgaccacaggctgtcggctaagttacaccctcgc                                                                                                                                                                                                                    <  2:601472‑M1/177‑52 (MQ=255)                                                                                                                                                   gTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTtctaccagcactttggctgaccacaggctgtcggc                                                                                                                                                                                                                                    <  2:712532‑M1/161‑36 (MQ=255)                                                                                                                                                   gTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTtctaccagcactttggctgaccacaggctgtcggc                                                                                                                                                                                                                                    <  2:191121‑M1/161‑36 (MQ=255)                                                                                                                                                   gTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCg                                                                                                                                                                                                                                                           >  1:418343/1‑138 (MQ=255)                                                                                                                                                    tAACGAAATTCGGCTTTCCGCTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTACGTTTTGTGCTGTGCCtggt                                                                                                                  <  1:582831/274‑1 (MQ=255)                                                                                                                                                       cGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGgtgt                                                                                                                                                                                                                                                       <  2:418336/138‑1 (MQ=255)                                                                                                                                                                 cGTGGCAATTACGGCGCTGTCGGTTAGTATTGTTCGTGGTGGGCCGGCGCTTGTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCCATCTCCGGGTTTtctaccagcactttggctgaccacaggctgtcggc                                                                                                                                                                                                                                    <  1:714122‑M1/147‑36 (MQ=255)                                                                                                                                                                 cGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCACCGGACACGGTATTTGTTGCGCTGTCGGCAATCGCCGGGGTTGCGGGGGTAGCGGTGTGGGTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCAGTCATGTGcaaca                                                                                                                                                                                                   >  2:607998/1‑180 (MQ=255)                                                                                                                                                                  gTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTCAGGCCTTGAGTGACTTACATTATCGCGCGCCGTGGTATTCGCTGGTGCCAGGATTAGGTTTTGTGCTGTGCCTGTTTGTCTGTGTTTGGCt                                                                                                   >  1:17338/1‑275 (MQ=255)                                                                                                                                                                     ccACTGACGGCGCTCTCGGTCAGTATGCTCTGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGt                                                                                                                                                                                               <  1:608011/180‑1 (MQ=255)                                                                                                                                                                             ttcgcttttgttCAGTCTGCTCGGGGGGTTGCTTGCTCGTTTTTCCAGCGTGGTGGCCCCTGACACGGTATTTGTTGCGCTGTCGTCAATCTCCGGGTTTGCGGTGGTGGCGGTGTGGCTGAGTGTCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGAt                                                                                         <  2:188969/263‑1 (MQ=255)                                                                                                                                                                                    tCGGTCTGTATGCTCGGTGGTGTGCTGGTGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGTCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCa                                                                                 <  1:413386/275‑1 (MQ=255)                                                                                                                                                                                    tCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTg                                                                                                                                                                                      >  2:375277/1‑174 (MQ=255)                                                                                                                                                                                        tCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTg                                                                                                                                                                                  <  1:375284/174‑1 (MQ=255)                                                                                                                                                                                        tCAGTATGCTCGGTGGTGTGCAGGCGCCGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTg                                                                                                                                                                                  <  1:636741/174‑1 (MQ=255)                                                                                                                                                                                              tGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGcaaca                                                                                                                                                                                                   >  1:170571/1‑151 (MQ=255)                                                                                                                                                                                              tGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTaa                                                                                                                                                                                             >  1:451513/1‑157 (MQ=255)                                                                                                                                                                                                  cGGTGGTGTGCTGGCGCTGTTTTCCAGCTTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCa                                                                                                                                                                                         <  2:451506/157‑1 (MQ=255)                                                                                                                                                                                                  cGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGt                                                                                                                                                                                               <  2:170569/151‑1 (MQ=255)                                                                                                                                                                                                           gCTTGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATATCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCTCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATcgcgc                                                                                                                                                                  <  1:102049/171‑1 (MQ=255)                                                                                                                                                                                                               gcgcTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGt                                                                                                                                                                                                              >  2:616418/1‑123 (MQ=255)                                                                                                                                                                                                                 gcTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTCAGGCATTGTGTGAATTACATTATCGCTCGCCGTGGTATCCGCTGGTGCCAGTCTTAGGTTTTTTGCTGTGCCTGGTGGCCTGTGTTGGTCTGGCGTTCGTGCCAGCGCAGCGACTTGGTGTGTTGTGGNGGTTActtg                                                    >  2:278357/1‑272 (MQ=255)                                                                                                                                                                                                                   tGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATc                                                                                                                                                                                                          <  1:616431/123‑1 (MQ=255)                                                                                                                                                                                                                       ttCGAGCGTGGTGGCCTCGGACGCGGTGTTTGTGGCGCTGTCGGCACTCTCCGGGTTTGCGGTGGTGTCGGTGTGGCTGGTTATCTGCTCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGtgttgcg                                              <  2:19230/275‑7 (MQ=255)                                                                                                                                                                                                                          cAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTTTGTTGCg                                            <  1:278362/274‑1 (MQ=255)                                                                                                                                                                                                                                                         gcgcTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAg                                                                                                                                                                                    >  2:8252/1‑107 (MQ=255)                                                                                                                                                                                                                                                         gcgcTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTAGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTTTGTTGCGTTGTGCTTTGGGGCTTATTTTCTTACTCAAcc            >  1:462316/1‑275 (MQ=255)                                                                                                                                                                                                                                                           gcTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTttgt                                                >  1:250443/1‑237 (MQ=255)                                                                                                                                                                                                                                                           gcTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGGAATAGGGTTTGTGCTGTGCCTGGTGGCCTGTGGTGGGCTGGCATTCGATCCAGCGGAGAGAATTGCGGTGTGGTGCGGGTTACCGTTGGTGGCGTTTTGCTCTGGTGCTTGTTTCCGTaactcac             >  2:85255/1‑266 (MQ=255)                                                                                                                                                                                                                                                             tGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGaa                                                                                                                                                                                <  1:8252/107‑1 (MQ=255)                                                                                                                                                                                                                                                               tCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTTTGTTGCg                                            <  2:250440/237‑1 (MQ=255)                                                                                                                                                                                                                                                                   cgagatcgcgtntttctacccccactttggctgccccccgcctgccggctaagttacaccctcgcgcttccagctccgtcgccatcgcgccatccagcagcaggatatcctgtttatcaagaagagcgcgtaacggattattctgcgacatgttctggctcctgttttgcgtttcggggttgagtaaggaaataagcaccatagcacaacgcaacaaacggtaacccgcaccacaacgcaattctctgcgctggatcgaatgccagcccaacaca  <  2:71049‑M1/263‑262 (MQ=255)                                                                                                                                                                                                                                                                   catcccgggggTTCGTGGTGGTAGTGCGGTGGCTGAGTATCTGCGANTCGCATTTTTTTTTTCGTCGCCGTCATCTGCAACATGGTAAGGCATTGAGTGTATTACATTAGCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTTTGTTGCGTTGTGCTATGGTGCTTATTTCCTTACTCAACCCCGAAACGCa  <  2:462309/267‑1 (MQ=255)                                                                                                                                                                                                                                                                         ccGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCg                                                                                                                                                                                                               >  2:73787/1‑64 (MQ=255)                                                                                                                                                                                                                                                                             gTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCAt                                                                                                                                                                                                           <  1:73788/64‑1 (MQ=255)                                                                                                                                                                                                                                                                                ttctaccagccctttggctgaccacaggctgtcggctaaggtacaccctcgcgcttccagctccgtcgccatcgcgccatccagcagcaggatatcctttttatcaagaagagcgcgtaacggattattctgcgacatgttctggctcctgttttgcgtttcggggttgagtaaggaaataagcaccatagcacaacgcaacaaacggtaacccgcaccacaacgca                                     <  1:465129‑M1/227‑227 (MQ=255)                                                                                                                                                                                                                                                                                tGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCt                                                                                                                                                                                                         >  2:460250/1‑63 (MQ=255)                                                                                                                                                                                                                                                                                tGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTTTGTTGCGTTGTGCTATGGTGCTTAt                          >  1:105026/1‑238 (MQ=255)                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                      AAGTAGGGATCCCGTACGCCGCTGATATTTTTAACTTCGTGATCCTGACGGCTATTCTTTCTGCAGCGAACTCCGGGTTATATGCCTCCGGGCGCATGCTGTGGTCGTTGTCGAATGAACGTACGCTACCGGCCTGTTTTGCGCGAGTAACGAAAAACGGCGTGCCACTGACGGCGCTGTCGGTCAGTATGCTCGGTGGTGTGCTGGCGCTGTTTTCCAGCGTGGTGGCCCCGGACACGGTATTTGTTGCGCTGTCGGCAATCTCCGGGTTTGCGGTGGTAGCGGTGTGGCTGAGTATCTGCGCCTCGCATTTTGTTTTTCGTCGCCGTCATCTGCAACAAGGTAAGGCATTGAGTGAATTACATTATCGCGCGCCGTGGTATCCGCTGGTGCCAGTATTAGGTTTTGTGCTGTGCCTGGTGGCCTGTGTTGGGCTGGCATTCGATCCAGCGCAGAGAATTGCGTTGTGGTGCGGGTTACCGTTTGTTGCGTTGTGCTATGGTGCTTATTTCCTTACTCAACCCCGAAACGCA  >  CP009273/271877‑272409

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.