New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 351197	32 (0.800)	4 (0.100)	4/296	NT	11.8%	coding (565/1260 nt)	codB	cytosine transporter
	?	CP009273	= 351248	29 (0.760)					coding (616/1260 nt)	codB	cytosine transporter

ACTGGGCGGAACTCAGGTTGGCTGGTTTGGCGTCGGTGTGGCGATGTTTGCCATTCCGGTGGGTAAGGCAACCGGGCTGGATATTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTGAATATCTGGA  >  CP009273/350932‑351464                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                             aCTGGGCGGAACTCAGGTTGGCTGGTTTGGCGTCGGTGTGGCGATGTTTGCCATTCCGGTGGGTAAGGCAACCGGGCTGGATATTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCCTGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTa                                                                                                                                                                                                                                                                      >  1:438942/1‑274 (MQ=255)               cgtgtGGCTGGTTTCGCGTATGTGNGCCTTTGTTTGCCGTTCCGGTAGGTTAGGCAATCGGGCTGGTTATTAATTTGCTGATTGCCGTTTCCTGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCGGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGAACAACCGTTAGATTTCAAAGTcgcg                                                                                                                                                                                                                                                       <  2:438935/271‑1 (MQ=255)                  ttGGTTTGTTTGTCGTCTGTGTGGCGATGTTTGCCATTCCGGTGGGTAAGGCAACCGGGCTGGATATTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCgcgct                                                                                                                                                                                                                                                     <  1:437631/274‑1 (MQ=255)                                                                    gtaaCCGGGCTTGTTATTTGTTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCAACGTCTTTGTTGGCATTTCGGCGCTGACGGTTTTTTCGGTGATTGCGGTTCCGGCTATCGCCTTCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACt                                                                                                                                                                                                   <  1:316893/272‑1 (MQ=255)                                                                            gCTGGATATTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCGGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGtt                                                                                                                                                                                                                                           <  1:314296/226‑1 (MQ=255)                                                                                   atTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGTTCATTTATCCGTGCGGGTACGCCCACCGCTGAATTTTTCCTGttttggg                                                                                                                                                                                    >  1:81170/1‑270 (MQ=255)                                                                                                   ctgTTTCCGGTTTACTTATGACCGTCACCGTCTTTTTTTGCATTTCGGCGCTGACGGTTCTTTCGGGGATTGCGGTTCCGGCTATCGCCGGCCTGGGAGGTTATTCAGGGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCGGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCg                                                                                                                                                                   <  1:385308/273‑1 (MQ=255)                                                                                                   ccGTTTCCGGTTTACTGATGACCGTCACCGTCTTNTTTGGCATTTTTGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCgcgct                                                                                                                                                                                                                                                     <  1:679724/193‑1 (MQ=255)                                                                                                                aCTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTtgt                                                                                                                                                                                                                                         >  1:38696/1‑192 (MQ=255)                                                                                                                    atgaCCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTgggg                                                                                                                                                                                                                                     <  2:38695/192‑1 (MQ=255)                                                                                                                         cgtcaccgtcTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCCTTTATCAGTGCGGGTACGCTCACCGCTGCCTTTGTCCGGGTTGGTCGCAATGCCAAACTGGGGGGGCgggttcgggtggtttcc                                                                                                                                              >  2:611690/1‑261 (MQ=255)                                                                                                                                   ttttttGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGCGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAANGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGATGACTTTGTCCGGTTTGGGCGCAATGCCAAACTGGCGGTGCTGGTCGGCG‑TGGTGGCCTTTTTTCTCgt                                                                                                                                  >  1:610593/1‑274 (MQ=255)                                                                                                                                                             tCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACtgataaatgaccccacaaccagcgccagcgcgaca                                                                                                                                                                                                                                           >  2:631114‑M1/1‑110 (MQ=255)                                                                                                                                                                 tCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACtgataaatgaccccacaaccagcgccagcgcgacattga                                                                                                                                                                                                                                       <  1:631128‑M1/145‑40 (MQ=255)                                                                                                                                                                             gTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTa                                                                                                                                                                                                                  >  1:171637/1‑154 (MQ=255)                                                                                                                                                                              ttCCGGCTAGCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTtgtg                                                                                                                                                                                                                                        <  1:461875/131‑1 (MQ=255)                                                                                                                                                                                 cGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCt                                                                                                                                                                                                              <  2:171635/154‑1 (MQ=255)                                                                                                                                                                                 cGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGCTGTTTATTTTCTGTGCAGCGGGCGCGGCGGGACTg                                                                                    >  1:225593/1‑275 (MQ=255)                                                                                                                                                                                               gtgGGGGGTTAGTCCGTGTGGCTTGCTGTGAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAAGGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCTGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGatat                                                                      <  2:225591/274‑1 (MQ=255)                                                                                                                                                                                                                              aCGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTAGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGTAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCctgctg                                       <  1:707946/275‑1 (MQ=255)                                                                                                                                                                                                                                 gCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACtgataaatgaccccacaaccagcgccagcgcgacatt                                                                                                                                                                                                                                         >  1:375022‑M1/1‑42 (MQ=255)                                                                                                                                                                                                                                  cATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACt                                                                                                                             >  2:131579/1‑185 (MQ=255)                                                                                                                                                                                                                                  cATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGATGGTtgt                                                                                                                                                                                                                                         >  1:51315/1‑78 (MQ=255)                                                                                                                                                                                                                                     gggCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACtgataaatgaccccacaaccagcgccagcgcgacattgaaa                                                                                                                                                                                                                                     <  2:375015‑M1/79‑42 (MQ=255)                                                                                                                                                                                                                                      ggcggcCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTgggg                                                                                                                                                                                                                                     <  2:51314/78‑1 (MQ=255)                                                                                                                                                                                                                                      ggcggcCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGtt                                                                                                                         <  1:131580/185‑1 (MQ=255)                                                                                                                                                                                                                                       gcggcCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGACTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGctgcctgc                               <  1:387859/274‑1 (MQ=255)                                                                                                                                                                                                                                          gcCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATTATTGCTCAGGGCCTGCTGCTGCCTGCg                              >  1:442883/1‑272 (MQ=255)                                                                                                                                                                                                                                                    aTTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTc                                                                                                                                    >  2:55431/1‑160 (MQ=255)                                                                                                                                                                                                                                                        aaaGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCa                                                                                                                                <  1:55432/160‑1 (MQ=255)                                                                                                                                                                                                                                                         aaGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGNCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTg            <  1:611703/275‑1 (MQ=255)                                                                                                                                                                                                                                                              gTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGc                                                                                           >  2:17292/1‑191 (MQ=255)                                                                                                                                                                                                                                                              gTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGCTATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTGAatat       >  1:214590/1‑275 (MQ=255)                                                                                                                                                                                                                                                              gTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCCCACCGCCGACTTTGTCCGGTTTGGTCGCAATGCCACACTGGCGGTGCTGGT‑GGCGATGGGGGCCTTTTTCCTCGGCAACTCGGTGATGGTTCTTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATAGCTCTGATGTGATGATTGCTGAGGGCATGCTGCGGCCTGGGATGGTGGTGGGGGGGCGGagttt       >  2:166420/1‑271 (MQ=255)                                                                                                                                                                                                                                                                  ttCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCa                                                                                       <  1:17292/191‑1 (MQ=255)                                                                                                                                                                                                                                                                   tCCCGCTCAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGTTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCGCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGTGCTGAATATCTGGa  <  1:154643/275‑1 (MQ=255)                                                                                                                                                                                                                                                                      cGCACAACCGTTAGATTTCAATGTCGCGCTGTCGCTGGtt                                                                                                                                                                                                                                           >  1:398629/1‑40 (MQ=255)                                                                                                                                                                                                                                                                          caACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTgg                                                                                                                                                                                                                                       <  2:398622/40‑1 (MQ=255)                                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                             ACTGGGCGGAACTCAGGTTGGCTGGTTTGGCGTCGGTGTGGCGATGTTTGCCATTCCGGTGGGTAAGGCAACCGGGCTGGATATTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTGAATATCTGGA  >  CP009273/350932‑351464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.