New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 351197	32 (0.800)	4 (0.100)	4/296	NT	11.8%	coding (565/1260 nt)	codB	cytosine transporter
	?	CP009273	= 351248	29 (0.760)					coding (616/1260 nt)	codB	cytosine transporter

GCAACCGGGCTGGATATTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTGAATATCTGGACCACCAACGATAACGCACTCTATGCGTCGGGTTTAGGTTTCGCC  >  CP009273/350999‑351508                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                      gtaaCCGGGCTTGTTATTTGTTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCAACGTCTTTGTTGGCATTTCGGCGCTGACGGTTTTTTCGGTGATTGCGGTTCCGGCTATCGCCTTCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACt                                                                                                                                                                                                                                               <  1:316893/272‑1 (MQ=255)                atTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGTTCATTTATCCGTGCGGGTACGCCCACCGCTGAATTTTTCCTGttttggg                                                                                                                                                                                                                                >  1:81170/1‑270 (MQ=255)                                ctgTTTCCGGTTTACTTATGACCGTCACCGTCTTTTTTTGCATTTCGGCGCTGACGGTTCTTTCGGGGATTGCGGTTCCGGCTATCGCCGGCCTGGGAGGTTATTCAGGGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCGGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCg                                                                                                                                                                                                               <  1:385308/273‑1 (MQ=255)                                                      cgtcaccgtcTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCCTTTATCAGTGCGGGTACGCTCACCGCTGCCTTTGTCCGGGTTGGTCGCAATGCCAAACTGGGGGGGCgggttcgggtggtttcc                                                                                                                                                                                          >  2:611690/1‑261 (MQ=255)                                                                ttttttGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGCGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAANGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGATGACTTTGTCCGGTTTGGGCGCAATGCCAAACTGGCGGTGCTGGTCGGCG‑TGGTGGCCTTTTTTCTCgt                                                                                                                                                                              >  1:610593/1‑274 (MQ=255)                                                                                                          gTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTa                                                                                                                                                                                                                                                              >  1:171637/1‑154 (MQ=255)                                                                                                              cGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCt                                                                                                                                                                                                                                                          <  2:171635/154‑1 (MQ=255)                                                                                                              cGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGCTGTTTATTTTCTGTGCAGCGGGCGCGGCGGGACTg                                                                                                                                >  1:225593/1‑275 (MQ=255)                                                                                                                            gtgGGGGGTTAGTCCGTGTGGCTTGCTGTGAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAAGGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCTGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGatat                                                                                                                  <  2:225591/274‑1 (MQ=255)                                                                                                                                                           aCGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTAGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGTAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCctgctg                                                                                   <  1:707946/275‑1 (MQ=255)                                                                                                                                                               cATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACt                                                                                                                                                                         >  2:131579/1‑185 (MQ=255)                                                                                                                                                                   ggcggcCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGtt                                                                                                                                                                     <  1:131580/185‑1 (MQ=255)                                                                                                                                                                    gcggcCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGACTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGctgcctgc                                                                           <  1:387859/274‑1 (MQ=255)                                                                                                                                                                       gcCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATTATTGCTCAGGGCCTGCTGCTGCCTGCg                                                                          >  1:442883/1‑272 (MQ=255)                                                                                                                                                                                 aTTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTc                                                                                                                                                                                >  2:55431/1‑160 (MQ=255)                                                                                                                                                                                     aaaGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCa                                                                                                                                                                            <  1:55432/160‑1 (MQ=255)                                                                                                                                                                                      aaGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGNCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTg                                                        <  1:611703/275‑1 (MQ=255)                                                                                                                                                                                           gTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGc                                                                                                                                       >  2:17292/1‑191 (MQ=255)                                                                                                                                                                                           gTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGCTATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTGAatat                                                   >  1:214590/1‑275 (MQ=255)                                                                                                                                                                                           gTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCCCACCGCCGACTTTGTCCGGTTTGGTCGCAATGCCACACTGGCGGTGCTGGT‑GGCGATGGGGGCCTTTTTCCTCGGCAACTCGGTGATGGTTCTTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATAGCTCTGATGTGATGATTGCTGAGGGCATGCTGCGGCCTGGGATGGTGGTGGGGGGGCGGagttt                                                   >  2:166420/1‑271 (MQ=255)                                                                                                                                                                                               ttCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCa                                                                                                                                   <  1:17292/191‑1 (MQ=255)                                                                                                                                                                                                tCCCGCTCAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGTTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCGCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGTGCTGAATATCTGGa                                              <  1:154643/275‑1 (MQ=255)                                                                                                                                                                                                                  tttCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAgtgcgggaacgaccgcttttaatgcgtccaggccgccc                                                                                                                                                                                                                                 <  2:375015‑M2/79‑39 (MQ=255)                                                                                                                                                                                                                  tttCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTTTAGGTACGCTCACCGCt                                                                                                                                                                                                                                                   >  1:396713/1‑61 (MQ=255)                                                                                                                                                                                                                    tCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAgtgcgggaacgaccgcttttaatgcgtccaggccgcccatgccgttaacagccagccacacggaataaccgcccaggcaggcgatagccggaaccgcaatcaccga                                                                                                                                                             <  1:631128‑M2/145‑107 (MQ=255)                                                                                                                                                                                                                      aaTGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAgtgcgggaacgaccgcttttaatgcgtccaggccgcccatgc                                                                                                                                                                                                                             >  1:375022‑M2/1‑37 (MQ=255)                                                                                                                                                                                                                      aaTGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACt                                                                                                                                                                                                                                               <  2:396706/61‑1 (MQ=255)                                                                                                                                                                                                                        tGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAgtgcgggaacgaccgcttttaatgcgtccaggccgcccatgccgttaacagccagccacacggaataaccgcccaggcaggcgatagccggaaccgcaatcaccgaaaga                                                                                                                                                         >  2:631114‑M2/1‑35 (MQ=255)                                                                                                                                                                                                                                            tgGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATATGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTGAATATCTGGACCACCAACGATAACGCACTCTATGCGTCGGGTTTAGGTTTCGcc  >  1:465168/1‑275 (MQ=255)                                                                                                                                                                                                                                            tgGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGCATATCTCTGATGTGATGACTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGTCTGAATATCTGGACACCCAACGATAACGCACTCTATGCGTCGGGTTTAGGATTCGcc  >  1:403477/1‑275 (MQ=255)                                                                                                                                                                                                                                              gggTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCtg                                                                                                                                                                                                         >  2:180357/1‑75 (MQ=255)                                                                                                                                                                                                                                                  cATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCtggt‑gg                                                                                                                                                                                                    <  1:180359/75‑1 (MQ=255)                                                                                                                                                                                                                                                  cATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAAc                                                                                                                                                                          >  2:368680/1‑101 (MQ=255)                                                                                                                                                                                                                                                  cATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGc                                                                                                                                       >  1:134777/1‑136 (MQ=255)                                                                                                                                                                                                                                                      tATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGt                                                                                                                                                                      <  1:368687/101‑1 (MQ=255)                                                                                                                                                                                                                                                      tATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCa                                                                                                                                   <  2:134776/136‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                      GCAACCGGGCTGGATATTAATTTGCTGATTGCCGTTTCCGGTTTACTGATGACCGTCACCGTCTTTTTTGGCATTTCGGCGCTGACGGTTCTTTCGGTGATTGCGGTTCCGGCTATCGCCTGCCTGGGCGGTTATTCCGTGTGGCTGGCTGTTAACGGCATGGGCGGCCTGGACGCATTAAAAGCGGTCGTTCCCGCACAACCGTTAGATTTCAATGTCGCGCTGGCGCTGGTTGTGGGGTCATTTATCAGTGCGGGTACGCTCACCGCTGACTTTGTCCGGTTTGGTCGCAATGCCAAACTGGCGGTGCTGGT‑GGCGATGGTGGCCTTTTTCCTCGGCAACTCGTTGATGTTTATTTTCGGTGCAGCGGGCGCTGCGGCACTGGGCATGGCGGATATCTCTGATGTGATGATTGCTCAGGGCCTGCTGCTGCCTGCGATTGTGGTGCTGGGGCTGAATATCTGGACCACCAACGATAACGCACTCTATGCGTCGGGTTTAGGTTTCGCC  >  CP009273/350999‑351508

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.