New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 370616	37 (0.920)	7 (0.180) +T	5/308	NT	16.0%	noncoding (231/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	CP009273	= 372947	NA (NA)					noncoding (157/187 nt)	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences

ACTGCCGAGAACGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGC  >  CP009273/370343‑370836                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                             aCTGCCGAGAACGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCAGATGCGGCGTNAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                                                                                                                                             >  1:682546/1‑275 (MQ=255)     ccGAGAACGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCATGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                                                                                                                                                                         >  1:652135/1‑275 (MQ=255)               gCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCCCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGCAGCGGGAATTTGTNGGCCTGATNAGACCCG‑TTAGCGTCGCCTCAGGCATCTGCGCACGACTGCCGGATTCTGCGTGCACTCCTTCTCCGGCCTACGGGTGtcgc                                                                                                                                                                                                                >  1:496167/1‑274 (MQ=14)                         gggcccgcccGGCACGACTGCCGTCTGCGGCGTGACAGCCTTCTCCGGCCTGCGGAGGGCTTGAGACTTGGTTGGTCTGATAGGGCGCG‑TTAGCTTCGCATCAGGCATCTGCGCGGGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCGACGGATGGCTCGGTAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAAttttt                                                                                                                                                                                                      <  2:233358/267‑3 (MQ=14)                           cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCAAGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCATACGGGTGGCGCGAGAAt                                                                                                                                                                                                          >  1:233360/1‑268 (MQ=255)                             caggccAGTACGCGTGCCGGATGGGGCGTGAACGCCTTGTCCGGGCTACGGATGGCGTGAGAGTTTGTAGGTCGGATAAGACGCG‑TTAGCGTCGCATCAGGAATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc                                                                                                                                                                                                  <  1:133729/270‑1 (MQ=14)                             cacaacaggaggACTGCGGGTGGCGGCGTGAACGTCTTATCCGGCCTAGGGATGGCGTGGGAATTTGTAGGTCTGATAAGACGCG‑TTGGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc                                                                                                                                                                                                  <  2:652121/263‑1 (MQ=11)                               tCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGCTGGCGCGGGAATTTGTAGGCCTGATATGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCGACGAGGGGCGCGAGCATTTGTAg                                                                                                                                                                                                    >  1:376224/1‑270 (MQ=255)                               tCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTGATCCGGCCTACGGGTGGCGCGAGAATGTGTAGGCCTg                                                                                                                                                                                               >  1:312760/1‑275 (MQ=255)                                          ctggtggATGCGGCGGTATCGCCTTAGGCGGTGTGTGGATTGCGTGAGAATTTGTAGGTCTAGTAAGACGCG‑TTAGCGTAGCATGAGGCATCTGCGCACGACTGACGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGt                                                                                                                                                                                    <  1:447317/270‑1 (MQ=14)                                          cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCAGATGCGGCGTGAACGCCGTATCCGGCCTACGGCTGGCGCGGGACTGTGTAGGCCTGCTACGACGCG‑TTAGCGACTCACACGGCCTCTGCGACCGCCTGCCGGATCCGGCGAGAACGCCTTCTCCGGCCTACGTGGGACTGGAGCAGTTGTAGGNGTgctccgtcgaac                                                                                                                                                                                    >  2:548396/1‑264 (MQ=11)                                                                        gCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTTCGCACGACTGCCGGATGCGGCGTGAACGCCGTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGAAGCGTTAGCGGCGCACCAGGAATCAgccgcccgc                                                                                                                                                       >  1:687154/1‑267 (MQ=14)                                                                          cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGACTTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACTACTGCCGGATGCGGCGTGAACGCCTTATCCgg                                                                                                                                                                                                                              >  1:177013/1‑201 (MQ=255)                                                                                   gCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCATGATAAGACGAGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATgcg                                                                                                                                            >  1:351438/1‑274 (MQ=255)                                                                                        gtaagccgTAGGCCTGATAAGACGCGCAAAGCGTCGCATCAGGCAT‑GGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGGGCGAGAAGTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGGACGACTGCCGGATGCGGCGTa                                                                                                                                       >  1:138872/8‑274 (MQ=11)                                                                                          aaTTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCAGCTGCGCNCGACGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGACTTTGTAGGCCTGATAAGACGCGTTAGCGt                                                                                                                                                                              <  1:525062/233‑1 (MQ=255)                                                                                                             aCGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCTGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGACTGCTAAGACGCGTTAGCGGCGCATCAGGCATCTGCGCACGACTGCCGGATGCGACGTAACAGCCTTATCCGGCCTACGGa                                                                                                                 >  1:19497/1‑275 (MQ=255)                                                                                                                        ggcGCATCAGGCACCTCCGCACCCCTGCCGGGTGCTGCGTGGTCGCTTTGTTCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGCCGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGTCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGa                                                                                                       <  2:682532/273‑1 (MQ=14)                                                                                                                        gTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCTTTAACGCCTGATCCGGCCGACGGAGGGCGCGGACATTTGTAGGCCGGATAACACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGa                                                                                                       <  1:341631/275‑1 (MQ=255)                                                                                                                          cGCATCAGGCAT‑GGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACACTTCGC‑CCATAAACCGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGAAAAGACGCGGTAGCGCCGCATCAGGCATCTGCGCACCACTGCCGGATGCCGAGTAAACGACTTATCCGGCCCACGGAAGACGCGGGaagt                                                                                                    >  1:310780/1‑273 (MQ=14)                                                                                                                                     tCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTa                                                                                                                                                                                  >  2:177472/1‑187 (MQ=39)                                                                                                                                         cgcACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt                                                                                                                                                                              <  1:177474/187‑1 (MQ=39)                                                                                                                                              gACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGAcgc                                                                                 >  1:297401/1‑275 (MQ=39)                                                                                                                                                             cgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGaa                                                                                                                                                                                                           >  2:379623/1‑138 (MQ=255)                                                                                                                                                                gAACGCCTGAGCCGGCGTACGGATGGCGCGGGAATTGGGAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGAAGCTGCGCACGACTGCCNGAGGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAgg                                                                <  1:548407/274‑1 (MQ=255)                                                                                                                                                                 aaCGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTg                                                                                                                                                                                                       <  1:379630/138‑1 (MQ=255)                                                                                                                                                                                   cGGATGGCGCGGGAAGTTGTAGGCGTGATTAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGcctacacttcgcccataaaccgtagggctgata                                                                                                                                                                                             >  1:523758‑M1/1‑97 (MQ=255)                                                                                                                                                                                       tGGCGCGGGAATTTGTAGGACTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGcctacacttcgcccataaaccgtaggcctgataagac                                                                                                                                                                                         <  2:523749‑M1/130‑38 (MQ=255)                                                                                                                                                                                        ggCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTCGCGTCGCATCAGGCATc                                                                                                                                                                 >  2:169859/1‑153 (MQ=38)                                                                                                                                                                                            cgGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgcg                                                                                                                                                             <  1:169861/153‑1 (MQ=38)                                                                                                                                                                                              ggAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTg                                                                                                                                                                                               >  1:329373/1‑117 (MQ=40)                                                                                                                                                                                                actttGTCGGCCTGATAATGCGCG‑TTAGCGTCGCATCCGTCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATATGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGt                               <  1:459466/273‑1 (MQ=255)                                                                                                                                                                                                  tttGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                                                                                                                                                           <  2:329367/117‑1 (MQ=39)                                                                                                                                                                                                                   aCGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGtctacacttcgcccataaaccgtaggcc                                                                                                                                                                                                  >  1:294433‑M1/1‑65 (MQ=255)                                                                                                                                                                                                                   aCGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtagccctgataagacgcgcatagcgtctcctgaggcatccgcgcaagacttatctatgtttacaccatacaatcatcaggcactttgt            >  2:650044‑M1/1‑65 (MQ=255)                                                                                                                                                                                                                   aCGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtc                                                                                                                                                                             >  2:547873‑M1/1‑65 (MQ=255)                                                                                                                                                                                                                    cgcg‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGa                                                                                                                                                        <  1:116031/134‑1 (MQ=34)                                                                                                                                                                                                                       g‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGtctacacttcgcccataaaccgtaggcctgat                                                                                                                                                                                              <  2:294428‑M1/93‑33 (MQ=255)                                                                                                                                                                                                                       g‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcat                                                                                                                                                                         <  1:547884‑M1/114‑54 (MQ=255)                                                                                                                                                                                                                               tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCTTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCGTGACGCTTCTgcgc                                                                                                                                                            >  1:1092/1‑120 (MQ=11)                                                                                                                                                                                                                               tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTCAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGCGGCGATAAACGGCTAGTCCGGCCTACAATTCGCACGTCGGc  >  1:357333/1‑274 (MQ=255)                                                                                                                                                                                                                                                 cACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCgg                                                                                                                                                 >  1:244979/1‑113 (MQ=35)                                                                                                                                                                                                                                                   cGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTg                                                                                                                                                                                               >  2:137979/1‑65 (MQ=40)                                                                                                                                                                                                                                                   cGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTg                                                                                                                                                                                               >  1:296092/1‑65 (MQ=40)                                                                                                                                                                                                                                                     aCTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATgc                                                                                                                                             <  2:244976/113‑1 (MQ=35)                                                                                                                                                                                                                                                       tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                                                                                                                                                           <  2:296087/65‑1 (MQ=40)                                                                                                                                                                                                                                                       tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                                                                                                                                                           <  1:137980/65‑1 (MQ=40)                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                             ACTGCCGAGAACGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCCTACATTTCGCCCGTAGGC  >  CP009273/370343‑370836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.