New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 432418	15 (0.370)	4 (0.100)	4/296	NT	14.7%	coding (374/519 nt)	pgpA	phosphatidylglycerophosphatase A
	?	CP009273	= 432689	32 (0.840)					coding (903/975 nt)	yajO	2‑carboxybenzaldehyde reductase

CTGGCAGCGATTCCGTTCTGGTATCTGATGACCTTTTTGCCCTGGCAGCTCTACTCGCTGGTGGTGATGCTGGGGATCTGTATCGGCGTCTATCTTTGTCATCAAACGGCGAAAGACATGGGTGTGCACGATCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAA  >  CP009273/432171‑432686                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                             cTGGCAGCGATTCCGTTCTGGTATCTGATGACCTTTTTGCCCTGGCAGCTCTACTCGCTGGTGGTGATGCTGGGGATCTGTATCGGCGTCTATCTTTGTCATCAAACGGCGCAAGACATGGGTGTGCACGATCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTgggt                                                                                                                                                                                                                                                   >  1:158546/1‑273 (MQ=255)                                                                                           tATCTTTGTCATCAAACGGCGAAAGACATGGGTGTGCACGATCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATggc                                                                                                                                                                                                                                >  2:60906/1‑204 (MQ=255)                                                                                               tttGTCATCAAACGGCGAAAGACATGGGTGTGCACGATCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCa                                                                                                                                                                                                                            <  1:60907/204‑1 (MQ=255)                                                                                                                                                  tCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGa                                                                                                                                                                                                                                                             >  2:538203/1‑120 (MQ=255)                                                                                                                                                     gcccattgtttATTGGTTTGTGTATATCGCTCTTGGCGTTGCCGACCAATGACTTGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGTTCCCCTGGTTTGATCGCAATGTGCATGGCGGAATGTGGATCATGATCGACGCTATTGTCGCCGGGGTGCTTTCCGCCGGCATCCTGTATTTTATCGCTCATCACTGGCCGCAGGTTATTCTGTCGTACTTGTGCACCGACGCCGGATGTGACGCTTGt                                                                                               <  2:228634/267‑1 (MQ=255)                                                                                                                                                      ggACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCg                                                                                                                                                                                                                                                         <  1:538213/120‑1 (MQ=255)                                                                                                                                                                                                   gagtgtcTGGCAGTGGGTTGCCGGCGGGTTTGTGGTTTTCCGTATTCTGGAGATGGGGAATCCGTGGCCGTTCCGCTGGTTTGTTCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGTTATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGAt                                                 <  2:158544/269‑1 (MQ=255)                                                                                                                                                                                                          tGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATcactttgaagccggaacagattgccgaactggaaacgccgtataaaccgcatcctgtcgtaggatttaa                                                                                                                                                                                                         >  1:383441‑M1/1‑47 (MQ=255)                                                                                                                                                                                                           ggCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATcactttgaagccggaacagattgccgaactggaaacgccgtataaaccgcatcctgtcgtaggatttaaataagagtccaggcctgat                                                                                                                                                                                      >  1:371666‑M1/1‑46 (MQ=255)                                                                                                                                                                                                              aGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATcactttgaagccggaacagattgccgaactggaaacgccgtataaaccgcatcctgtcgtaggatttaaataa                                                                                                                                                                                                     <  2:383434‑M1/116‑74 (MQ=255)                                                                                                                                                                                                               gTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATcactttgaagccggaacagattgccgaactggaaacgccgtataaaccgcatcctgtcgtaggatttaaataagagtccaggcctgatgaga                                                                                                                                                                                  <  2:371659‑M1/134‑93 (MQ=255)                                                                                                                                                                                                                    ttGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGAt                                                                                                                                                                                                                     >  1:726699/1‑94 (MQ=255)                                                                                                                                                                                                                        cgccgGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATg                                                                                                                                                                                                                 <  2:726685/94‑1 (MQ=255)                                                                                                                                                                                                                                        ttCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTtg                                                                                                                          >  2:13497/1‑165 (MQ=255)                                                                                                                                                                                                                                         tCCGTATTCTGGATATGTGGAAGCCGTGACCGATCCGCTGGTTTGATCGCCATGTGAATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGAGTATTCTGGCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTAATCAGGCCCGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTCTACGGCGTTTCCAGTTCGGCACTCTGttgc           >  1:655527/1‑273 (MQ=255)                                                                                                                                                                                                                                            gTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAgg                                                                                                                                                                              >  1:461194/1‑109 (MQ=255)                                                                                                                                                                                                                                            gTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCa                                                                                                                      <  1:13497/165‑1 (MQ=255)                                                                                                                                                                                                                                                tCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATc                                                                                                                                                                          <  2:461187/109‑1 (MQ=255)                                                                                                                                                                                                                                                  tGGATTTGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCaaa  <  1:345688/275‑1 (MQ=255)                                                                                                                                                                                                                                                    gATATcactttgaagccggaacagattgccgaactggaaacgccgtataaaccgcatcctgtcgtaggatttaaa                                                                                                                                                                                                        <  1:724049‑M1/75‑71 (MQ=255)                                                                                                                                                                                                                                                       atGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGTTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTg                                                                                                                                                   >  2:269193/1‑125 (MQ=255)                                                                                                                                                                                                                                                       atGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAgg                                                                                                                                                                              >  2:188235/1‑98 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                             CTGGCAGCGATTCCGTTCTGGTATCTGATGACCTTTTTGCCCTGGCAGCTCTACTCGCTGGTGGTGATGCTGGGGATCTGTATCGGCGTCTATCTTTGTCATCAAACGGCGAAAGACATGGGTGTGCACGATCATGGCAGCATTGTCTGGGACGAATTTATTGGTATGTGGATCACGCTCATGGCGCTGCCGACCAATGACTGGCAGTGGGTTGCCGCCGGGTTTGTGATTTTCCGTATTCTGGATATGTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAA  >  CP009273/432171‑432686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.