New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 432418	15 (0.370)	4 (0.100)	4/296	NT	14.7%	coding (374/519 nt)	pgpA	phosphatidylglycerophosphatase A
	?	CP009273	= 432689	32 (0.840)					coding (903/975 nt)	yajO	2‑carboxybenzaldehyde reductase

GTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGC  >  CP009273/432419‑432932                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                    gtgGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTCTCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGCTGCCTGATGTGACGCTTGTCACGTCTCATCAAGCCTGGACTCTTATTTACATCCTACAACTTGATGTTGTTTATAAGGCTTTTCCAGTTCATTACTCTGTTTCGGCTTCCAAGTgttca                                                                                                                                                                                                                                                 >  2:669404/1‑271 (MQ=255)                                   aaggtgCATGGTGGCATGGGGATCATGATCGACGATATTGTCGCCGTGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGNACCGATGCCTGCTGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGttcttc                                                                                                                                                                                                               <  1:669418/272‑1 (MQ=255)                                                 cATGGGGGTCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACCGGATGCGGTTTATACGGCGTTTCCAGTCAGGCACTCTGTTCCGGCTTAACAGACATCTCCACCGATTTCAATACGTCATCAAGCTGTTCTTCGCGCGAAGTTCCGa                                                                                                                                                                                                 >  1:155971/1‑275 (MQ=255)                                                 cATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGCATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGa                                                                                                                                                                                                 >  1:453541/1‑275 (MQ=255)                                                                                                             tATCGGTCATCACTGGTCGCTGGGTATTCTGTCGTAGTTGTGCAACGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGNTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTTCTCgt                                                                                                                                      >  1:545498/1‑274 (MQ=255)                                                                                                                    gatcaCTGTCCGCTGGGTATTCTGTCGTAGTTGTGCACCGAGGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGGTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGcccc                                                                                                                              <  1:31569/274‑1 (MQ=255)                                                                                                                                             cGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGACGTTCCGa                                                                                                                                                                                                 >  1:248989/1‑183 (MQ=255)                                                                                                                                                 gTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAAt                                                                                                                                                                                             <  2:248986/183‑1 (MQ=255)                                                                                                                                                      tcACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTTCGGCAATg                                                                                                                                                                                >  2:564729/2‑191 (MQ=255)                                                                                                                                                          cGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCg                                                                                                                                                                            <  1:564741/191‑1 (MQ=255)                                                                                                                                                                             tGTCACGTCTCATTAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCANTAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGc                                                                      <  1:685454/274‑1 (MQ=255)                                                                                                                                                                                    tctcATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGatatccagaatacggaaaatcacaaacccggcggcaacccac                                                                                                                                                                                                           <  2:371659‑M2/134‑43 (MQ=255)                                                                                                                                                                                        atcaGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGatatccagaatacggaaaatcacaaacccggcggcaacccactgcc                                                                                                                                                                                                       >  1:371666‑M2/1‑88 (MQ=255)                                                                                                                                                                                        atcaGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCCCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGCCCAGCGCAACTTGTGCTCGTGTCGCCCCCCGTTCTTCACTGACGCCTTTTACCCGCTCTGCGATCTGCTNCTCCTTTTCCTCTctttctcttta                                                            >  2:483779/1‑268 (MQ=255)                                                                                                                                                                                                  gACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTc                                                                                                                                                                                                                                      >  2:448216/1‑93 (MQ=255)                                                                                                                                                                                                      ctTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATa                                                                                                                                                                                                                                  <  1:448223/93‑1 (MQ=255)                                                                                                                                                                                                       ttATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGatatccagaatacggaaaatcacaaacccggcggcaacccact                                                                                                                                                                                                          <  2:383434‑M2/116‑44 (MQ=255)                                                                                                                                                                                                       ttATTTAAATCCTACGACAAGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCg                                                                                                                                                                            >  1:591484/1‑146 (MQ=255)                                                                                                                                                                                                          tttAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGatatc                                                                                                                                                                                                                                                <  1:724049‑M2/75‑6 (MQ=255)                                                                                                                                                                                                           ttAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGatatccagaatacggaaaatcacaaacccggcggcaacccactgcca                                                                                                                                                                                                      >  1:383441‑M2/1‑69 (MQ=255)                                                                                                                                                                                                           ttAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGttt                                                                                                                                                                        <  2:591471/146‑1 (MQ=255)                                                                                                                                                                                                           ttAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGtt                                                                                                                                                                         <  1:165735/145‑1 (MQ=255)                                                                                                                                                                                                              aaTCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCAcc                                                                                                                                                                                                                                            <  2:724035/75‑1 (MQ=255)                                                                                                                                                                                                                           gATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCCGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTg                                                                                                          >  2:168618/1‑192 (MQ=255)                                                                                                                                                                                                                               cGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTaa                                                                                                      <  1:168620/192‑1 (MQ=255)                                                                                                                                                                                                                                     ataCGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCa                                                                                                                                                                                   >  1:41816/1‑109 (MQ=255)                                                                                                                                                                                                                                     ataCGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCtcatc                                       >  1:568249/1‑249 (MQ=255)                                                                                                                                                                                                                                         ggCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGc                                                                                                                                                                               <  2:41815/109‑1 (MQ=255)                                                                                                                                                                                                                                         ggCGTTTCCAGTTCGGCAACCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGac                                   <  2:568236/249‑1 (MQ=255)                                                                                                                                                                                                                                          gCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCGTCACTGACGCCTGTTAACCNCTCTGCGATCTGCGCGTCATTTTCATCGCTTCCTTTATAGAGATTTTTCCCCACCTCATCAGAAACCAGTCGTGCGGTAGTTTCCCCCCAc        >  1:564283/1‑275 (MQ=255)                                                                                                                                                                                                                                           cGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGt                                                                                                                                                                                                                                        >  2:572299/1‑50 (MQ=255)                                                                                                                                                                                                                                           cGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCa                                                                                                                                                            >  2:554885/1‑126 (MQ=255)                                                                                                                                                                                                                                            gTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCAtt                                                                              >  2:574206/1‑203 (MQ=255)                                                                                                                                                                                                                                               tCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCaa                                                                                                                                                                                                                                    <  1:572312/50‑1 (MQ=255)                                                                                                                                                                                                                                               tCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGcc                                                                                                                                                        <  1:554897/126‑1 (MQ=255)                                                                                                                                                                                                                                                ccAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCa                                                                          <  1:574219/203‑1 (MQ=255)                                                                                                                                                                                                                                                ccAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGCcgc  >  1:374555/1‑275 (MQ=255)                                                                                                                                                                                                                                                                          aaaGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATc                                                                                                                                                                                            >  2:664928/1‑63 (MQ=255)                                                                                                                                                                                                                                                                          aaaGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTa                                                                                                                                                                       >  2:44039/1‑84 (MQ=255)                                                                                                                                                                                                                                                                              tGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTg                                                                                                                                                                                        <  1:664942/63‑1 (MQ=255)                                                                                                                                                                                                                                                                              tGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTca                                                                                                                                                                   <  1:44040/84‑1 (MQ=255)                                                                                                                                                                                                                                                                              tGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTca                                                                                                                                                                   <  2:399640/84‑1 (MQ=255)                                                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                    GTGGAAGCCGTGGCCGATCCGCTGGTTTGATCGCAATGTGCATGGCGGCATGGGGATCATGATCGACGATATTGTCGCCGGGGTGATTTCCGCAGGCATCCTGTATTTTATCGGTCATCACTGGCCGCTGGGTATTCTGTCGTAGTTGTGCACCGATGCCTGATGTGACGCTTGTCACGTCTCATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAATAGCTCATCAAGCTGTTCTTCGCGCGAAGTTCCGATAATCGGTGCGGCAATGCCCGGTTTACTCAACAACCAGGCCAGCGCAACTTGTGCTCGTGTCGCCCCCAGTTCTTCACTGACGCCTGTTAACCGCTCTGCGATCTGCGCGTCATTTTCATCGCTTTCTTTATAGAGATTTTTCCCCACCTCATCAGACACCAGTCGTGCGGTAGTTTCTCCCCACGGACGC  >  CP009273/432419‑432932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.