New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 551289	39 (0.970)	3 (0.080)	3/278	NT	7.3%	coding (1223/1386 nt)	cysS	cysteinyl‑tRNA synthetase
	?	CP009273	= 552240	41 (1.140)					coding (90/213 nt)	ybcJ	ribosome‑associated protein; putative RNA‑binding protein

TGCCGGTGGCGAAGCGTTTGAAGCGCGCTTTATTGAAGCGATGGACGACGATTTCAACACCCCGGAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATCCGGTTATCGTCTGCGCCACCACAACATTCCCATCAGTAGCATCCCCGGCAACCACACCCACATCAATTCAGAAATAAT  >  CP009273/551062‑551562                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                  tGCCGGTGGCGAAGCGTTTGAAGCGCGCTTTATTGAAGCGATGGACGACGATTTCAACACCCCGGAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTNCTGGAGCANGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTc                                                                                                                                                                                                                                    >  1:484387/1‑275 (MQ=255)             aGCGTTTGAAGCGCGCTTTATTGAAGCGATGGACGACGATTTCAACACCCCGGAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTTGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGAGGCGCGCAGGCAGACGACAGCGAAGTGGCTGCGATTGAAGCGTTAATTCAACAGCGTCTGAATGCACgac                                                                                                                                                                                                                        >  1:467877/1‑273 (MQ=255)                                  tGACGCGATGGACTACTATTTCAACACCCCGTAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGGAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTACGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGggcggcgg                                                                                                                                                                                                   <  1:738211/275‑1 (MQ=255)                                         aTGGACGACGATTTCAACACCCCGGAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGCGAAAGAACCGGAAGCGTTCCTGCAACGCGGCGCCCAGGCAGACGACAGAGCAGTGGGTGAGATGGAAGCGGTCATTACACCGCGGCGGAAGTCCCGGAAAGCGAAGGGAGGggcggcgcggggg                                                                                                                                                                                              >  2:727619/1‑267 (MQ=255)                                                             cccGGAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTg                                                                                                                                                                                                                                                         >  2:464450/1‑194 (MQ=255)                                                                 gAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGc                                                                                                                                                                                                                                                     <  1:464457/194‑1 (MQ=255)                                                                              tACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATGCAACAGCGTCTGGATTCCCGTAAAGAGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATGGTCTTAACGAGATGGGGATCGTGCTg                                                                                                                                                       >  1:6762/1‑275 (MQ=255)                                                                              tACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATCCAACAGCGGCTGGATGTCCGTAAAGCGAAAGAATGGGCGGCGGCGGAAGCGGCGCGGGATCGTCTTAACGAGATGGGGATCGTGCtt                                                                                                                                                       >  2:695580/1‑274 (MQ=255)                                                                                   tttGATATGGCGCGTGCAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTa                                                                                                                                                                                                                                                 >  1:545006/1‑180 (MQ=255)                                                                                   tttGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGc                                                                                                                                                                                                                                                                         >  2:329546/1‑156 (MQ=255)                                                                                       atatGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAg                                                                                                                                                                                                                                                                     <  1:329552/156‑1 (MQ=255)                                                                                       atatGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTc                                                                                                                                                                                                                                             <  2:544995/180‑1 (MQ=255)                                                                                       atatGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGc                                                                                                                                              <  1:291108/275‑1 (MQ=255)                                                                                       atatGGCGCGTGAAGTAAACCGTATGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGc                                                                                                                                                                                                                                                                 <  1:322120/160‑1 (MQ=255)                                                                                           ggCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCGATGGCATCTCACCTGCGTAAACTTTCCGCTGCTATGGGCCTGCTGGCGAAAGAACCGGAAGCGTTCCTGAAAAGCGGCACGCAGCCAGCCGCCGGCGAAGTGGACGAGATTGACGCGTCATAGCTAAAGCACCTGGATGCCGGTCAAGCGAAAGACTGAGCGGCGGCGGACTGGGCGCGGGAGGGGCTGAAGGAGGCGGGGGTCGGGCCGGGCGATggtcgt                                                                                                                                           >  2:244439/1‑270 (MQ=255)                                                                                           ggCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCACTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACa                                                                                                                                                                                                                                         >  2:532082/1‑180 (MQ=255)                                                                                             cgcgTGAAGTAAACCGTCTGAAAGCAGATGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCNGGATGCCCGTAAAGCGAAAGACTGGgcggcggcg                                                                                                                                                                                                 >  1:543745/1‑218 (MQ=255)                                                                                             cgcgTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGc                                                                                                                                                                                                                                                     >  1:413809/1‑166 (MQ=255)                                                                                             cgcgTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCaa                                                                                                                                                                                                                                           >  2:219060/1‑176 (MQ=255)                                                                                               cgTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGt                                                                                                                                                                                                                                     <  1:532091/180‑1 (MQ=255)                                                                                                 tGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTa                                                                                                                                                                                                                                                 <  2:413802/166‑1 (MQ=255)                                                                                                 tGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGc                                                                                                                                                                                                                                       <  1:219062/176‑1 (MQ=255)                                                                                                         aCCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCt                                                                                                                                                                             >  2:684628/1‑226 (MQ=255)                                                                                                             tCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGTAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAAc                                                                                                                                                                         <  1:684642/226‑1 (MQ=255)                                                                                                             tCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGAGTTAATTCAACAGCGTCTGGATGACCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATTGTGGTGGGAAGTGGCGCGTAAGGGACCNCCTgctc                                                                                                                          >  2:281690/1‑270 (MQ=255)                                                                                                                                gCAGCGGCGAATGCAATGGCATCTCACCTGCGTAACTTTTCCGCTGTATTGGGCCTGCGGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACTAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTg                                                                                                     <  1:34848/275‑1 (MQ=255)                                                                                                                                                     tctcACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGCTGCGGCGCGTGATCGTCTTNACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATc                                                                                >  1:570018/1‑275 (MQ=255)                                                                                                                                                             gCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCt                                                                                                                                                                             >  1:71640/1‑174 (MQ=255)                                                                                                                                                                tAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAga                                                                                                                                                                                                                                                                                <  1:418073/72‑1 (MQ=255)                                                                                                                                                                 aaaCTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAAc                                                                                                                                                                         <  2:71639/174‑1 (MQ=255)                                                                                                                                                                   aCTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttg                                                                                                                                                            >  2:113404‑M1/1‑66 (MQ=255)                                                                                                                                                                       tCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctg                                                                                                                                                        <  1:113405‑M1/185‑124 (MQ=255)                                                                                                                                                                               aTTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgacaatcgcgattgccgaaggcccggtgaaagtcgacggtgcggttgaaacgcgcaaccgctgcaaaatcgtcgccggtcagacagtgagttttgcaggccacagcgtacaggttgttgcctgatccctttc                                                                                                                                               >  1:262388‑M1/1‑54 (MQ=255)                                                                                                                                                                                 tGGTCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGCAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATCCGGTTATCGTCTGCGCCACCACAACAtt                                                    <  1:434875/275‑1 (MQ=255)                                                                                                                                                                                        gctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGaccac                                                                                                                                >  1:548266/1‑192 (MQ=255)                                                                                                                                                                                        gctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGcg                                                                                                                          >  1:205972/1‑198 (MQ=255)                                                                                                                                                                                            gAGCAAGAACCTGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCTGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTg                                                                                                                                                          <  1:585978/162‑1 (MQ=255)                                                                                                                                                                                            gAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTgg                                                                                                                            <  2:548255/192‑1 (MQ=255)                                                                                                                                                                                              ggacgacccGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATGGAAGCGTTAATTCAACAGCGTCTGGAGGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATCCGGTTATCGTCTGCGCCACCACAACATTCCCATCAGTAGCa                                       <  1:343415/268‑1 (MQ=255)                                                                                                                                                                                                     ctgtgaGCGTTCTTTCAACGCTGCGCGCAGGCAGACGCCATCGAGGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGACAGACTGGGCGGCGGCGGAGGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATCCGGTTATCGTCTGCGCCACCACAACATTCCCATCAGTAGCATCCCCgg                                <  1:244442/270‑1 (MQ=255)                                                                                                                                                                                                                       aGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtac                                                                                                                                                                     <  2:404286‑M1/124‑111 (MQ=255)                                                                                                                                                                                                                           gcgcgcAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGtttt                                                                                      >  1:158358/1‑199 (MQ=255)                                                                                                                                                                                                                           gccggcaggcagACGGCAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCTTCTTGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATCCGGTTATCGTCTGCGCCACCACAACATTCCCATCAGTAGCATCCCCGGCAACCACACGCACATCAAtt            <  1:727633/269‑1 (MQ=255)                                                                                                                                                                                                                               gcaggcagACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCa                                                                                  <  2:158356/199‑1 (MQ=255)                                                                                                                                                                                                                                  ggCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccggcctgtatcaacaggccggttctcttttcagacttttgccctctacgccccgttcatccatgctgatagcatcgacattttgccgaagcgaccatcatgccaaccgttattacgcacgccgccgttcccctatgca    <  1:319318‑M1/274‑272 (MQ=255)                                                                                                                                                                                                                                   gcagACGACAGCGAAGTGGCTGAGATTGAAGCGGTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACGGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATCCGGTTATCGTCTGCGCCACCACAACATTCCCATCAGTAGCATCCCCGGCAACCACACCCACATCAATTCAGAaataat  <  1:281695/275‑1 (MQ=255)                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                  TGCCGGTGGCGAAGCGTTTGAAGCGCGCTTTATTGAAGCGATGGACGACGATTTCAACACCCCGGAAGCCTATTCCGTACTGTTTGATATGGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGCAAGGGACCACCTGGCGTCGTAAGTAATTGCGCTATTGCCGGATGCGAGTTTTCGCATCCGGTTATCGTCTGCGCCACCACAACATTCCCATCAGTAGCATCCCCGGCAACCACACCCACATCAATTCAGAAATAAT  >  CP009273/551062‑551562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.