New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	843477 =	28 (0.700)	7 (0.180)	5/296	NT	16.3%	intergenic (‑17/+387)	glnH/dps	glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protetin
	?	CP009273	843724 =	45 (1.170)					intergenic (‑264/+140)	glnH/dps	glutamine transporter subunit/Fe‑binding and storage protein; stress‑inducible DNA‑binding protetin

ATCCCACTGAAATCCATCGGCTTCAGTTCGTAATCCAGCTTCAGCTCTTTAGCGATGGCAGCCCACAGATCAACGTCAAAGCCCACATATTTATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGAAAAAACAATCTTTATGTAACGATTGTGTGATGATGTGGATACAAAAAATTTACTTAATCA  >  CP009273/843237‑843742                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                          aTCCCACTGAAATCCATCGGCTTCAGTTAGTAATCCAGCTTCAGCTCTTTAGCGATGGCAGCCCACAGATCAACGTCAAAGCCCACATATTTATCGCCCTGTTTAAATTCAAACGGAACGAAGTCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCNGGGTCAGTGCAGCCAGTGAAACTTTTAATACAAACTTCATAGAATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACat                                                                                                                                                                                                                                         >  1:553586/1‑275 (MQ=255)                                     aGCTTCAGCTCTTTAGCGAGGGCAGCCCACAGATCAACGTCAAAGCCCACATATTTATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGCAcccc                                                                                                                                                                                                                                                         >  1:608524/1‑223 (MQ=255)                                                                   aGATCAACGTCAAAGCCCACATATTTATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGAATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATCGATGAAAAAATCGTGCCAGTTTTGCAATACCTTGATTTTTCGAGATGCGGCAAAAACATAATGCa                                                                                                                                                                       >  1:599582/1‑275 (MQ=255)                                                                                         atTTATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCNGCGGCATGNGAAGAAACCGCATAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTGTTCGAGACGCGGCAAAAACGTGATGCACGATTta                                                                                                                                                                <  1:483272/260‑1 (MQ=255)                                                                                          tttATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGa                                                                                                                                                <  1:335553/275‑1 (MQ=255)                                                                                               cccccAGTTTAAATTCAAACAGAACAAAGGCGGTCTCCGGCGCGACATCTGATTTTTTAGCCGCGGCATGAGAATACACCTCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATg                                                                                                                                           <  2:16087/273‑1 (MQ=255)                                                                                                 cccTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAAt                                                                                                                                                                                                                             >  1:195872/1‑191 (MQ=255)                                                                                                 accTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTNATACAGACTTTATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATg                                                                                                                                           <  1:675117/272‑1 (MQ=255)                                                                                                 acatgattAAATGCACACGGAACGAGGGCGATTCCCATCGCGACAACTACTTTTTTATCCGCCACATGAGAAGAAACCACAAAAGACAGGGTCAGTGCAGCCAGTGAAACTTTTTATACAGACTTCATATCATTTACTTTTGTCTATCCACTGGACGATCCCCTGCGTGACAGTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGCGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCa                                                                                                                                         <  2:506123/269‑1 (MQ=255)                                                                                                     gTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTg                                                                                                                                                                                                                         <  2:195870/191‑1 (MQ=255)                                                                                                                                     agaaaaaagcagcttcctgacaggaggtcgtttttttttgcagcccaccacaacgcaattatttagtgcatccagctggtatctccagctgattaagtaaattttttgTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATtgt                                                                                                     >  2:254080‑M1/109‑275 (MQ=255)                                                                                                                                           aagcggcttcctgacaggaggccgttttgttttgcagcccacctcaacgcacttatttagtgcatccatctgctatctccagctgattaagtaaattttttgTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTaaaa                                                                                                         <  1:254083‑M1/163‑1 (MQ=255)                                                                                                                                           aagcggcttcctgacaggaggccgttttgttttgcagcccacctcaacgcacttatttagtgcatccatctgctatctccagctgattaagtaaattttttgTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAAACTGGTGcgccaaaattagtcactc                                                                                               <  2:521842‑M1/173‑9 (MQ=255)                                                                                                                                           aCAATTAATTTTTTATCCGCGGAATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTATTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACt                                                                                                <  1:397728/274‑1 (MQ=255)                                                                                                                                                             gcgGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGGGAGACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACACCTTGATTTTTCGAGATGCGGCAACAACGTAATGCACGa                                                                                                                                                                    >  1:607748/1‑188 (MQ=255)                                                                                                                                                               gccgttttgttttgcagcccacctcaacgcacttatttagtgcatccatctgctatctccagctgattaagtaaattttttgTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGGGATGCACGATTGATAGGGCAATACCCTGAAGATGCATCATTGTGGGGCACCAATAGGGGGCGCTAAAATTGTTCAGCCAACAcagcgcttattntgcn                                                                           <  2:156858‑M1/193‑6 (MQ=255)                                                                                                                                                                 cATGGGAAGAAACCGCAAAAGCCAGGGTCAGTTCAGCCAGTTAAACTTTTAATACAGACTTCATAGCATTTGCTTTTTTCTATCCACGGGACGATCCACTGCGTGACATTGACATATCTGAAGAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAATGTGATGCATGATTta                                                                                                                                                                <  2:607735/188‑1 (MQ=255)                                                                                                                                                                       gttttgcatcccccctcaacgtacttatttagtgcatccttctgctatctccagcttattaagtaaatttttttTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCt                                                                   >  1:156860‑M1/75‑275 (MQ=255)                                                                                                                                                                           tgccgcccacctcaacgcacttatttagtgcatccatctgctatctccagctgattaagtaaattttttgTATCCACGGGACGATCCNCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTGTTTAGCGTAAAACCt                                                                   >  1:521851‑M1/71‑271 (MQ=255)                                                                                                                                                                           aaCCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTca                                                                                                                                                                                                                                            >  1:99872/1‑102 (MQ=255)                                                                                                                                                                               gCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACata                                                                                                                                                                                                                                        <  2:99871/102‑1 (MQ=255)                                                                                                                                                                                 aaaaGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATg                                                                                                                                                                         >  1:718902/1‑163 (MQ=255)                                                                                                                                                                                     gCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACg                                                                                                                                                                     <  2:718888/163‑1 (MQ=255)                                                                                                                                                                                            cacttatttagtgcatccatctgctatctccagctgattaagtaaattttttgTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTaaa                                                                       <  1:356081‑M1/197‑1 (MQ=255)                                                                                                                                                                                               gTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATtgt                                                                                                     >  2:599825/1‑217 (MQ=255)                                                                                                                                                                                                   aGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCAc                                                                                                 <  1:599838/217‑1 (MQ=255)                                                                                                                                                                                                     ccAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGt                                                                                                                                                                                                                                                    >  1:356047/1‑68 (MQ=255)                                                                                                                                                                                                         tGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACa                                                                                                                                                                                                                                                <  2:356041/68‑1 (MQ=255)                                                                                                                                                                                                             catctgctatctccagctgattaagtaaattttttgt                                                                                                                                                                                                                                                                           >  2:344229‑M1/37‑37 (MQ=255)                                                                                                                                                                                                                        aGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACg                                                                                                                                                                              >  2:662427/1‑119 (MQ=255)                                                                                                                                                                                                                         gACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAAtt                                                                                                       >  1:135393/1‑189 (MQ=255)                                                                                                                                                                                                                            ttCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGAt                                                                                                                                                                          <  1:662441/119‑1 (MQ=255)                                                                                                                                                                                                                             tCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGc                                                                                                   <  2:135392/189‑1 (MQ=255)                                                                                                                                                                                                                               aTAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACGAATCTGGTGCGCTAAAATTNTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGAAAAAACAATCTTTATGTAACGATTGTGTGATGATGTGGa                       >  1:557903/1‑263 (MQ=255)                                                                                                                                                                                                                                        ccTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAg                                                                                                                                                             >  2:397062/1‑120 (MQ=255)                                                                                                                                                                                                                                        ccTTTTTTCTATCCACGGGACGATCCCCTGCGTAACATTCACATATATGAAAAAATCGTGCCAGTCTTGCAACTCCTTGCTTTTTCGAGATACGGCAAAAACGTCATGCACGATTTATAGGGCAATCCCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAACATTGTGGACTCAAAACAGTGACTATTTACCGTAAACCCGAATGAAAAAACAAACTTTATGTACCTATTTTGTTATGATGTTGATACAAAAAATTTACTTATTCa  >  2:7925/1‑275 (MQ=255)                                                                                                                                                                                                                                            ttttCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCa                                                                                                                                                         <  1:397069/120‑1 (MQ=255)                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                          ATCCCACTGAAATCCATCGGCTTCAGTTCGTAATCCAGCTTCAGCTCTTTAGCGATGGCAGCCCACAGATCAACGTCAAAGCCCACATATTTATCGCCCTGTTTAAATTCAAACGGAACGAAGGCGGTATCCGTCGCGACAACTAATTTTTTATCCGCGGCATGAGAAGAAACCGCAAAAGCCAGGGTCAGTGCAGCCAGTGAAACTTTTAATACAGACTTCATAGCATTTCCTTTTTTCTATCCACGGGACGATCCCCTGCGTGACATTCACATATATGAAAAAATCGTGCCAGTTTTGCAACTCCTTGATTTTTCGAGATGCGGCAAAAACGTGATGCACGATTTATAGGGCAATACCCTGAAGATGCACCATTCTGGGGCACCAATCTGGTGCGCTAAAATTGTGCACTCAACACAGTGATTATTTAGCGTAAAACCTGATGAAAAAACAATCTTTATGTAACGATTGTGTGATGATGTGGATACAAAAAATTTACTTAATCA  >  CP009273/843237‑843742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.