New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1032410 =	38 (0.950)	4 (0.110)	4/292	NT	9.4%	coding (206/858 nt)	hyaF	protein involved in nickel incorporation into hydrogenase‑1 proteins
	?	CP009273	1033576 =	41 (1.080)					coding (381/1545 nt)	cbdA	cytochrome bd‑II oxidase, subunit I

ATTCACCCGTGGGCGGAACTGATAAACCTGATGCGCGGGCTTGTCGAACCGCAGCAGGAGCGTGCCTCATGAGCGAAACTTTTTTCCATCTGCTGGGGCCAGGAACGCAACCGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATGGCGGGTGCGCAGACGTCGCGGCGAAAAGTTGCTGGAGGACAAACTGGAGGCTGGCTGCGCGCCGCTGGCGTTGTGGCAGGCGGCAACGCAAAATCTCTTGCCGACAGATTCGCTGTTACCGC  >  CP009273/1032137‑1032679                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                              cgtaatgcgacattgcgctcccgtccgcgcagtaaataccaggcgctgatcgccataataaacatggccccggtcacgtagcccgccattacggtgtgcacaaatttcacctggctgaccggattaaagaccagctcgctgaagctggtcatctccatacgcagggtgtcgatatcaaaatgcgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcag                                                                                                                                                                                                                                                                              <  1:145487‑M1/2‑1 (MQ=255)       gcgccatgtcgctcccgtccgtgcagtaaataccaggctctgttcgccataataaacatggccccggtcacgtagcccagcattatggtgtgcacaaatttcacctggctgaccggattaaagaccagctcgtttaagctggtcagctccatacgcagggtgtcgatatcaaaatgcgcaccggtcgggtattgcatccaaccgttggcattcaatctccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTGCt                                                                                                                                                                                                                                                                         >  1:362156‑M1/268‑274 (MQ=255)                                                       cagGAGCGTGCCTCATGAGCGAAACTTTTTTCCATCTGCTGGGGCCAGGAACGCAACCGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTACATCCCACCGCCGACGATCGTCCCTTTATCaa                                                                                                                                                                                                                         >  2:299965/1‑274 (MQ=255)                                                           aGCGTGCCTCATGAGCGAAACTTTTTTCCATCTGCTGGGGCCAGGAACGCAACCGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACg                                                                                                                                                                                                                     <  1:299970/274‑1 (MQ=255)                                                               tGCCTCATGAGCGAAACTTTTTTCCATCTGCTGGGGCCAGGAACGCAACCGAACGATGACAGTATCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTAGAACTGTTAAATATCAACACCGACGATCCTCACTTTACCAATAAGCCtcc                                                                                                                                                                                                                >  1:12631/1‑274 (MQ=255)                                                                                     tagaaaggaaagggCCAGGAACGCAACCGAGCGAGGACAGTTTCACGATGAAGCCACTGCCGAACACCTGTCAGGTGAATGATGAACAGCGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGGGATTGCGCGGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGt                                                                                                                                                                                           <  2:731982/263‑1 (MQ=255)                                                                                          ctgctgGGGCCAGGAACGCAACCGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCcgac                                                                                                                                                                                                                                          >  2:402007/1‑222 (MQ=255)                                                                                              tgGGGCCAGGAACGCAACCGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATc                                                                                                                                                                                                                                      <  1:402014/222‑1 (MQ=255)                                                                                                     aGGAACGCAACCGAACGATAACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATAAGCTTCTCGGGGAAGGGTAAGTGTAAGTGCGCATTCAGCAAGCTg                                                                                                                                                                          >  1:599929/1‑275 (MQ=255)                                                                                                        atttcacctggctgaccggattaaagaccagctcgctgaagctggtcatctccatacgcagggtgtcgatatcaaaatgcgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAgg                                                                                                                                                                                                                                                                             <  2:99593‑M1/3‑1 (MQ=255)                                                                                                            cacctggctgaccggattaaagaccagctcgctgaagctggtcatctccatacgcagggtgtcgatatcaaaatgcgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTGCt                                                                                                                                                                                                                                                                         >  1:99594‑M1/167‑173 (MQ=255)                                                                                                            cAACCGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCCACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCGACGCCGACGATCGTCAATTTATCAATACGCTTCTCGGGGAAGGGGAAgtgt                                                                                                                                                                                               >  1:731996/1‑247 (MQ=255)                                                                                                                cGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGAGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGTAAGTGTCAGTGCGCATTCAGCAGGCTGACGACagtga                                                                                                                                                                <  1:591322/274‑1 (MQ=255)                                                                                                                      aTGACGGTGTTAGCATGAATACACTGCCGAGCAGCTGTCAGGTGAATGATGAACCGGGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCTAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACagtgaaagtg                                                                                                                                                           <  2:616047/273‑1 (MQ=255)                                                                                                                      aTGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCcga                                                                                                                                                                                                                                           <  1:402294/193‑1 (MQ=255)                                                                                                                                                   aTCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTGTCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATg                                                                                                                            >  1:385815/1‑275 (MQ=255)                                                                                                                                                   aTCACCGGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAAAAATGTGCTCACAGCCCGCGGGTGATTTCGCTGTTAAACGAGTTACAAAATGAACTAAGCGAACGCCAACCGGCGTTGGGCGAGGTGCTGGCAGCCGATGTGTTAAATCTGAACGCcggcga                                                                                                                                                                                                                                        >  2:54821/1‑167 (MQ=255)                                                                                                                                                       ccTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGt                                                                                                                                                                                                                                    <  1:54822/167‑1 (MQ=255)                                                                                                                                                               acgcagggtgtcgatatcaaaatgcgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCg                                                                                                                                                                                                              <  1:101490‑M1/66‑1 (MQ=255)                                                                                                                                                                   agggtgtcgatatcaaaatgcgcacctgtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCgggga                                                                                                                                                                                                          >  2:101489‑M1/112‑181 (MQ=255)                                                                                                                                                                     ggtgtcgatatcaaaatgcgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagca                                                                                                                                                                                                                                                                               <  1:53398‑M1/1‑1 (MQ=255)                                                                                                                                                                         tcgatatcaaaatgcgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaactcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTg                                                                                                                                                                                                                                                                           >  2:53397‑M1/106‑110 (MQ=255)                                                                                                                                                                         aaCCGAGTATGGCGGGCCTGGAGCAATGCGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGNGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAAt                                                                                                                                                       >  1:520803/1‑226 (MQ=255)                                                                                                                                                                                   aatgcgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagca                                                                                                                                                                                                                                                                               <  1:152504‑M1/1‑1 (MQ=255)                                                                                                                                                                                     cggcCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTc                                                                                                                                                                                                                                   >  2:340420/1‑138 (MQ=255)                                                                                                                                                                                     cggcCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGTCGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATGGCGGGTGCGCAGAATTGGCAGCGAAAAGTTGcgg                                                                                          >  1:692558/1‑273 (MQ=255)                                                                                                                                                                                       cgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTg                                                                                                                                                                                                                                                                           >  2:152503‑M1/92‑96 (MQ=255)                                                                                                                                                                                       cgcaccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCg                                                                                                                                                                                                                                     <  1:75474‑M1/43‑1 (MQ=255)                                                                                                                                                                                         ccTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACtt                                                                                                                                                                                                                               <  1:340426/138‑1 (MQ=255)                                                                                                                                                                                           ccggtcgggtattgcatccaaccgttggcattcaatatccacaacgcagagagatttgaaccgaacgccaccagccacgtcaccagcAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCAc                                                                                                                                                                                                                                 >  2:75473‑M1/88‑134 (MQ=255)                                                                                                                                                                                                   tgtgCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATGGCGGGTGCGCAGACGTCGCGGCGAAAAGTTGCTGGAGGACAAACAGGa                                                                            >  1:74255/1‑275 (MQ=255)                                                                                                                                                                                                             gCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGc                                                                                                                                                                            >  1:322535/1‑169 (MQ=255)                                                                                                                                                                                                             gCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGCCGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATGGCGGGTGGGCAGACGTGGGGGCGAAAAGTTGGTGGAGGGCAAACttgggggggtcttg                                                                  >  2:619383/1‑262 (MQ=255)                                                                                                                                                                                                              agcgaaggttcttGCGCTGTTAACCAGGTTACCACATCAAATAAGCGCACTCCACCGGCCATTGGGCGATATGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATGGCGGGTGCGCAGACGTCGCGGCGAAAAGTTGCTGGAGGACAAACTGGAGGCTGGCTgcg                                                                 <  2:692544/264‑1 (MQ=255)                                                                                                                                                                                                                cGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAg                                                                                                                                                                                                                                                                    >  2:375268/1‑78 (MQ=255)                                                                                                                                                                                                                 gCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGAAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGTGGATTATGGCGGGTGCTCAGACGCCGCGGCG‑AAAGTTGCTGGAGGACAAAAGGGAGGCTGGCTGCGggcc                                                             >  2:710029/1‑275 (MQ=255)                                                                                                                                                                                                                  cAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACa                                                                                                                                                                    >  1:308363/1‑172 (MQ=255)                                                                                                                                                                                                                    ggTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGa                                                                                                                                                                                                                                                                <  1:375275/78‑1 (MQ=255)                                                                                                                                                                                                                      tGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGAGCGCATTCAGCAGGCTGACGACagtga                                                                                                                                                                <  2:308358/172‑1 (MQ=255)                                                                                                                                                                                                                        aTTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTc                                                                                                                                                                                                                                   >  2:435400/1‑103 (MQ=255)                                                                                                                                                                                                                            cgcTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACtt                                                                                                                                                                                                                               <  1:435407/103‑1 (MQ=255)                                                                                                                                                                                                                                         gTTACAACATCAACTAATCGAACGCCAACCGCCGTGGGGCGAGGTGCTGGCAGTCGATATGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATGATGGCGGGTGCGCAGACGTCGCGGCGAAAAGTTGCTGGAGGACAAACTGGAGGCTGGCTGCGCGCCGCTGGCGTTGTGGCAGGCGGCa                                       <  1:159839/274‑1 (MQ=255)                                                                                                                                                                                                                                           tACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGAtc                                                                                                                                          >  1:317074/1‑173 (MQ=255)                                                                                                                                                                                                                                               acaTCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGAtcttct                                                                                                                                      <  2:317069/173‑1 (MQ=255)                                                                                                                                                                                                                                                   cAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCggggaa                                                                                                                                                                                                         >  1:214551/1‑102 (MQ=255)                                                                                                                                                                                                                                                   cAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCggggaa                                                                                                                                                                                                         >  1:604874/1‑102 (MQ=255)                                                                                                                                                                                                                                                   cAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCggggaa                                                                                                                                                                                                         >  1:688841/1‑102 (MQ=255)                                                                                                                                                                                                                                                       tAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCggggaagggg                                                                                                                                                                                                     <  2:688827/102‑1 (MQ=255)                                                                                                                                                                                                                                                       tAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCggggaagggg                                                                                                                                                                                                     <  2:604861/102‑1 (MQ=255)                                                                                                                                                                                                                                                       tAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCggggaagggg                                                                                                                                                                                                     <  2:214549/102‑1 (MQ=255)                                                                                                                                                                                                                                                                             gggCGTGGTGTTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTAGGGGAAGGGGAAGTGTCAGTGNGCATTCAGCAGGCTGACGGCAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATGGCGGGTGCGCAGACGTCGCGGCGAAAAGTTGCTGGAGGACAAACTGGAGGCTGGCTGCGCGCCGCTGGCGTTGTGGCCGGCGGCAACGCAAAAGCTCTTGCCGACAGATTCGCTGTTAccgc  <  1:544223/275‑1 (MQ=255)                                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                              ATTCACCCGTGGGCGGAACTGATAAACCTGATGCGCGGGCTTGTCGAACCGCAGCAGGAGCGTGCCTCATGAGCGAAACTTTTTTCCATCTGCTGGGGCCAGGAACGCAACCGAACGATGACAGTTTCAGCATGAATCCACTGCCGATCACCTGTCAGGTGAATGATGAACCGAGTATGGCGGCCCTGGAGCAATGTGCTCACAGCCCGCAGGTGATTGCGCTGTTAAACGAGTTACAACATCAACTAAGCGAACGCCAACCGCCGTTGGGCGAGGTGCTGGCAGTCGATCTGTTAAATCTCAACGCCGACGATCGTCACTTTATCAATACGCTTCTCGGGGAAGGGGAAGTGTCAGTGCGCATTCAGCAGGCTGACGACAGTGAAAGTGAAATACAGGAGGCGATCTTCTGCGGATTATGGCGGGTGCGCAGACGTCGCGGCGAAAAGTTGCTGGAGGACAAACTGGAGGCTGGCTGCGCGCCGCTGGCGTTGTGGCAGGCGGCAACGCAAAATCTCTTGCCGACAGATTCGCTGTTACCGC  >  CP009273/1032137‑1032679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.