New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1032410 =	38 (0.950)	4 (0.110)	4/292	NT	9.4%	coding (206/858 nt)	hyaF	protein involved in nickel incorporation into hydrogenase‑1 proteins
	?	CP009273	1033576 =	41 (1.080)					coding (381/1545 nt)	cbdA	cytochrome bd‑II oxidase, subunit I

ACCATTTACGTGGTCACCGGCAAAACAATCTACCGCGATATGACGCGCTTCTGGGGTAAGCTCTTCGGTATCAATTTTGCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACG  >  CP009273/1033307‑1033848                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                  aCCATTTACGTGGTCACCGGCAAAACAATCTACCGCGATATGACGCGCTTCTGGGGTAAGCTCTTCGGTATCAATTTTGCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAAAACAAGCACCTGCGGGt                                                                                                                                                                                                                                                                              >  1:178603/1‑275 (MQ=255)                                       tttGACGCCTTTCTTGGGTAAGCTCTTCGGTATCAATTTTGCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGt                                                                                                                                                                                                                                        <  2:12146/273‑1 (MQ=255)                                                         tAAGCTCTTCGGTATCAATTTTGCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTACTGGCCTTCTTCCTCGAATCAACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCACCGGCTGACTAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGAGTTCGGTTGAAATCTCTCTGTGTTGTGGCTTTTgcttcc                                                                                                                                                                                                                        >  2:212728/1‑268 (MQ=255)                                                          aaGCTCTTCGGTATCAATTTTTCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCATTTTGGTACTAACTGTTCATTCTATTCCAACAATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCaa                                                                                                                                                                                                                     <  1:212730/275‑1 (MQ=255)                                                                          aTTTTGCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATctctct                                                                                                                                                                                                                                            >  1:175730/1‑236 (MQ=255)                                                                              tGCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGt                                                                                                                                                                                                                                        <  2:175728/236‑1 (MQ=255)                                                                                                       aCCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCtggtgg                                                                                                                                                                                                                                                                >  2:30373/1‑187 (MQ=255)                                                                                                           ttgAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGNCTTCTTCCTCGAATCCACCCTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCt                                                                                                                                                                     <  1:559682/272‑1 (MQ=255)                                                                                                           tGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGtt                                                                                                                                                                                                                                                            <  1:30374/187‑1 (MQ=255)                                                                                                                     ttttGGTACTAACTGGTCATTCTATTCCACCTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCa                                                                                                                                                                                                                                                     <  1:380112/183‑1 (MQ=255)                                                                                                                          gTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAAt                                                                                                                                                                                                                          >  1:123015/1‑206 (MQ=255)                                                                                                                              tAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCa                                                                                                                                                                                                                      <  2:123014/206‑1 (MQ=255)                                                                                                                                    gTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGtt                                                                                                                                                                                                                                       >  2:721218/1‑183 (MQ=255)                                                                                                                                     tCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCaa                                                                                                                                                                                                                                                    >  1:406458/1‑169 (MQ=255)                                                                                                                                        ttCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTgg                                                                                                                                                                                                                                   <  1:721232/183‑1 (MQ=255)                                                                                                                                        ttCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGa                                                                                                                                                                           <  1:107264/239‑1 (MQ=255)                                                                                                                                         tCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAAtct                                                                                                                                                                                                                                                <  2:406451/169‑1 (MQ=255)                                                                                                                                                  aCTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTCTGGAGATGACCAGCTTCAGCGAGCTGGCCTTTaac                                                                                                                             >  1:173577/1‑274 (MQ=255)                                                                                                                                                  aCTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGAGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAAt                                                                                                                             >  1:462061/1‑275 (MQ=255)                                                                                                                                                   cTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCg                                                                                                                                                                            >  1:347804/1‑227 (MQ=255)                                                                                                                                                     aTGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATAccc                                                                                                                                                                                                   >  2:703607/1‑202 (MQ=255)                                                                                                                                                       gtgGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATAACGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGt                                                                                                                        >  1:294031/1‑275 (MQ=255)                                                                                                                                                       gtgGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCGGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCCGCGTCTGGAGATGACCAGCTGCAGGGAGCGGCCCTTTAATCCGGt                                                                                                                        >  2:145486/1‑275 (MQ=255)                                                                                                                                                         gggCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGAcc                                                                                                                                                                                               <  1:703621/202‑1 (MQ=255)                                                                                                                                                          ggCGATACTTTTGGCGCACCGCTGGTGATGGAAGCATTAATGTCCTCCTTACTCGAACCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGACGGAATAAATACCAGCACCTGATGGTGACCTGGCcggtgg                                                                                                                                                                                                                                                                >  2:404740/1‑136 (MQ=255)                                                                                                                                                           gCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGtt                                                                                                                                                                                                                                                       >  2:413806/1‑144 (MQ=255)                                                                                                                                                              atatTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGtt                                                                                                                                                                                                                                                            <  1:404747/136‑1 (MQ=255)                                                                                                                                                               tatTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCaaa                                                                                                                                                                                                                                                   <  1:413813/144‑1 (MQ=255)                                                                                                                                                               tatTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCACCGGTTGGATGCAATCCCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCCGCGAGCTGGTCTTTCATCCGGTccgtca                                                                                                                  >  2:334094/1‑268 (MQ=255)                                                                                                                                                                     tGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCg                                                                                                                                                                            >  2:473904/1‑209 (MQ=255)                                                                                                                                                                         gcACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGacac                                                                                                                                                                        <  1:473912/209‑1 (MQ=255)                                                                                                                                                                                                 aTGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTTGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACg                                                                              <  1:584485/274‑1 (MQ=255)                                                                                                                                                                                                        tccccgagaagcgtattgataaagtgacgatcgtcggcgttgagatttaacagatcgactgccagcacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACAGGTGCGCATTTTGATATCGACACCCt                                                                                                                                                                     >  2:101489‑M2/71‑181 (MQ=255)                                                                                                                                                                                                           tcCTCGACTCCGTCTTTTTCTTGCTGTTTTTTTTCGGTTGTCAACGTCTGAATATATACCAGCACCTGCTGGTGACGTTGCTTGTGGCGTTCTGTTCAAATCTCTCTGCGTTGTGTATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTGTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGc                                                                    <  1:363346/274‑1 (MQ=255)                                                                                                                                                                                                           tcCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGcc                                                                   <  1:334100/275‑1 (MQ=255)                                                                                                                                                                                                            cgagaagcgtattgataaagtgacgatcgtcggcgttgagatttaacagatcgactgccagcacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGt                                                                                                                                                                 <  1:101490‑M2/115‑1 (MQ=255)                                                                                                                                                                                                               cGAATCCACCTTTGTCGGGCGGTTCTTCTTCGCCTGGCAACGGCTGAATAAATACCAGCACCGGCTGGTGACGTGGCTGGTGACGTTCGGTTCCACTCTCTCTGCGTTGTGGATATTGAATGCCACCGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATAGCGACACCCTGCGTATGGAAATGACCCGATCACGCAAGCTGGTCTTTAATCCGGTCAGCGAGGTGACATTTGTGC‑CACACGGAATGGGCGGCGACGTCACCgggggcggg                                                                >  2:658362/1‑269 (MQ=255)                                                                                                                                                                                                                 aaTCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGt                                                                                                                        >  1:173728/1‑217 (MQ=255)                                                                                                                                                                                                                     cACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGc                                                                                                                    <  2:173726/217‑1 (MQ=255)                                                                                                                                                                                                                               gtgacgatcgtcggcgttgagatttaacagatcgactgccagcacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCgg                                                                                                                                                                                             >  2:75473‑M2/48‑134 (MQ=255)                                                                                                                                                                                                                                   cgatcgtcggcgttgagatttaacagatcgactgccagcacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTgcg                                                                                                                                                                                         <  1:75474‑M2/91‑1 (MQ=255)                                                                                                                                                                                                                                    tttcttcttcGCTCGGCACCGGCTGAATACATCCCAGCTCCTGCTGTTTACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTTCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCt                                          <  2:178601/274‑1 (MQ=255)                                                                                                                                                                                                                                      tcttcttcGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGt                                                                                                                                                                                                                 >  1:37939/1‑107 (MQ=255)                                                                                                                                                                                                                                          cttcGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGa                                                                                                                                                                                                             <  2:37938/107‑1 (MQ=255)                                                                                                                                                                                                                                                            ggatgaataCCAGCACCTGCTGGTGACGTTGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCAGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAg                   <  1:344151/269‑1 (MQ=255)                                                                                                                                                                                                                                                            gAATAAATACCAGCGCCTGCTGGTGACGTTGCTTGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCTACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCATCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAg                   <  1:658376/274‑1 (MQ=255)                                                                                                                                                                                                                                                                       agcacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTg                                                                                                              >  1:99594‑M2/8‑173 (MQ=255)                                                                                                                                                                                                                                                                       agcacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGAGATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGCTGACCAGCTTAAACGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CATAATGCTGGGCTACGTGACCGGGGCCATGTTTATTATGGCGAACAGAGCCTGGTATTTACTGCACGGACGGGAGCGACATGgcgc        >  1:362156‑M2/8‑274 (MQ=255)                                                                                                                                                                                                                                                                         cacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTgcg                                                                                                                                                                                         >  2:152503‑M2/6‑96 (MQ=255)                                                                                                                                                                                                                                                                         cacctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGAGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGa                                                                                                                                                                           >  2:53397‑M2/6‑110 (MQ=255)                                                                                                                                                                                                                                                                           cctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAAt                                                                                                          <  2:99593‑M2/170‑1 (MQ=255)                                                                                                                                                                                                                                                                            ctGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACg  <  1:145487‑M2/273‑1 (MQ=255)                                                                                                                                                                                                                                                                             tGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCAtt                                                                                                                                                                                     <  1:152504‑M2/95‑1 (MQ=255)                                                                                                                                                                                                                                                                             tGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACAcc                                                                                                                                                                       <  1:53398‑M2/109‑1 (MQ=255)                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                  ACCATTTACGTGGTCACCGGCAAAACAATCTACCGCGATATGACGCGCTTCTGGGGTAAGCTCTTCGGTATCAATTTTGCTCTTGGCGTGGCTACCGGCCTGACCATGGAGTTTCAGTTTGGTACTAACTGGTCATTCTATTCCAACTATGTGGGCGATATTTTTGGCGCACCGCTGGCGATGGAAGCATTAATGGCCTTCTTCCTCGAATCCACCTTTGTCGGGCTGTTCTTCTTCGGCTGGCAACGGCTGAATAAATACCAGCACCTGCTGGTGACGTGGCTGGTGGCGTTCGGTTCAAATCTCTCTGCGTTGTGGATATTGAATGCCAACGGTTGGATGCAATACCCGACCGGTGCGCATTTTGATATCGACACCCTGCGTATGGAGATGACCAGCTTCAGCGAGCTGGTCTTTAATCCGGTCAGCCAGGTGAAATTTGTGCACAC‑CGTAATGGCGGGCTACGTGACCGGGGCCATGTTTATTATGGCGATCAGCGCCTGGTATTTACTGCGCGGACGGGAGCGCAATGTCGCATTACG  >  CP009273/1033307‑1033848

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.