New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1124436 =	31 (0.770)	8 (0.210)	5/292	NT	26.6%	coding (1142/1536 nt)	murJ	putative peptidoglycan lipid II flippase
	?	CP009273	1124498 =	15 (0.400)					coding (1204/1536 nt)	murJ	putative peptidoglycan lipid II flippase

TCGCTGTCGAAAAGTTTTGCCAGTGGCAATCATGATGAATACAACCGTTTGATGGACTGGGGGTTGCGTCTTTGTTTCCTGTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCG  >  CP009273/1124162‑1124666                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                       agtacgcggcaccccccgccagcacgaccgccattaaacgcagtaaacgccagggcatggtacccaatgaccactccggcatnatatgtaanatacctaaaagcccgccagacatcaccagtaccgccaccaccagacgcaacagaaacgccatccagccgggttgcggggtaaagattttctgcttacgcaactgccagtaaagcagcgaagcattcagacacgccgccagaccaatagaaagtgaccgcccggcatgtttcaacggaccaata                                                                                                                                                                                                                                        >  1:473930‑M1/275‑275 (MQ=255)    aggTCGAAAAGTTTTGCCAGTGGCAATCATGATGGATACAACCGTTTGATGGACTGGGGGTTGCGTCTTTGTTTCCTTTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTCGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTaaaa                                                                                                                                                                                                                                      <  1:589937/272‑1 (MQ=255)                 ttGCCAGTGGCAATCATGATGAATACAACCGTTTGATGGACTGGGGGTTGCGTCTTTGTTTCCTGTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGAGTGTAGTGTAAGTGTTGGCTGCTGGCTTTTGTTCCCGCCATGACATTAAAActgcgtttagggtt                                                                                                                                                                                                                        >  2:589924/1‑262 (MQ=255)                              tCATGATGCATACATCCGTTTGATGGACTGGGGGTTGCGTCTTTGTTTCCTGTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCNGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATACCCGCCAGGACATTACAACGCCAGTGACAATTGCCATCGTTACg                                                                                                                                                                                                            <  1:549503/274‑1 (MQ=255)                                                tttGATGGACTGGGGGTTGCGTCTTTGTTTCCTGTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTAGGCTGATGGACACGCAAttta                                                                                                                                                                                         >  2:146655/1‑273 (MQ=255)                                                 ttGATGGACTGGGGGTTGCGTCTTTGTTTCCTGTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATtga                                                                                                                                                                                         <  1:146656/274‑1 (MQ=255)                                                  tGATGGTCTGTGGGTTGCGTTTTTGTTTCCGGTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATtgat                                                                                                                                                                                        <  1:98132/274‑1 (MQ=255)                                                                                             gtctgtggtggggTTGGGCATTCTTTCTGGTCCGTTGACCGGTGCGGTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCATACTCGGTGGGTTTCGTTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTGGAAACATGCCGGGCTGTCa                                                                                                                                             <  1:583082/262‑1 (MQ=255)                                                                                                       gcacgccagacatcaccagtaccgccaccaccagacgcaacagaaacgccatccagccgggttgcggggtaaagattttctgcttacgcaactgccagtaaagcagcgaagcattcagacacgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTaa                                                                                                                                                                                                  <  2:182715‑M1/39‑1 (MQ=255)                                                                                                           gccagacatcaccagtaccgccaccaccagacgcaacagaaacgccatccagccgggttgcggggtaaagattttctgcttacgcaactgccagtaaagcagcgaagcattcagacacgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCa                                                                                                                                                                                              >  1:182717‑M1/169‑211 (MQ=255)                                                                                                                          taccgccaccaccagacgcaacagaaacgccatccagccgggttgcggggtaaagattttctgcttacgcaactgccagtaaagcagcgaagcattcagacacgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaata                                                                                                                                                                                                                                        <  2:530161‑M1/1‑1 (MQ=255)                                                                                                                              gccaccaccagacgcaacagaaacgccatccagccgggttgcggggtaaagattttctgcttacgcaactgccagtaaagcagcgaagcattcagacacgccgccagaccaatagaaagtgacagaccggcatgtttcaacggaccaatAAACg                                                                                                                                                                                                                                    >  1:530170‑M1/150‑154 (MQ=255)                                                                                                                                    cGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAAcc                                                                                                                                                                                   >  2:191035/1‑197 (MQ=255)                                                                                                                                       ttCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGAtt                                                                                                                                                                                                      >  1:373223/1‑175 (MQ=255)                                                                                                                                        tCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGc                                                                                                                                                                               <  1:191037/197‑1 (MQ=255)                                                                                                                                           cTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTaa                                                                                                                                                                                                  <  2:373216/175‑1 (MQ=255)                                                                                                                                                        gTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTTTCAATTTCTATTGGTCTGGCGGCGTGGCTGAATGCTTCGCGGCTTTACTGGCGGTGGCggag                                                                                  >  2:677704/1‑271 (MQ=255)                                                                                                                                                             tttcgcgcgTTTGTTGCGCTGATGACCCATCGGGCGTTAATTGCCTACTCGGTGGGGTTGATTTGCCTGTATGTAGTGAAATTTTTGGCTCCTGGCTTTTATTCCCTCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGaa                                                                            <  2:708491/270‑1 (MQ=255)                                                                                                                                                                aCCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGTTCTGGCGGCGGGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTACGTAGgaaa                                                                          >  2:728908/1‑274 (MQ=255)                                                                                                                                                                      tttGATGCGCTGATGACCCAGCGGGCGTTAATTTCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGACTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTa                                                                    <  1:728922/274‑1 (MQ=255)                                                                                                                                                                               cTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTaa                                                                                                                                                                                                  >  1:352641/1‑139 (MQ=255)                                                                                                                                                                                   tgaCCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCa                                                                                                                                                                                              <  2:352635/139‑1 (MQ=255)                                                                                                                                                                                                                 cgaagcattcagacacgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTaa                                                                                                                                                                                                  <  2:135700‑M1/39‑1 (MQ=255)                                                                                                                                                                                                                     gcattcagacacgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCa                                                                                                                                                                                              >  1:135701‑M1/63‑105 (MQ=255)                                                                                                                                                                                                                           agacacgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTaa                                                                                                                                                                                                  <  1:479093‑M1/39‑1 (MQ=255)                                                                                                                                                                                                                             gCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTgg                                                                                                                                                                      >  1:397112/1‑121 (MQ=255)                                                                                                                                                                                                                               cTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTa                                                                                                                                                                                                              >  1:265827/1‑79 (MQ=255)                                                                                                                                                                                                                               acgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCa                                                                                                                                                                                              >  2:479084‑M1/53‑95 (MQ=255)                                                                                                                                                                                                                                cgccgccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTaa                                                                                                                                                                                                  <  1:8873‑M1/39‑1 (MQ=255)                                                                                                                                                                                                                                 gATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCg                                                                                                                                                                  <  2:397105/121‑1 (MQ=255)                                                                                                                                                                                                                                  aTTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTaaaa                                                                                                                                                                                                                                      >  2:511748/1‑52 (MQ=255)                                                                                                                                                                                                                                   ttGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATAGTTACGCt                                                                                                                                                                                                          <  2:265823/79‑1 (MQ=255)                                                                                                                                                                                                                                    gccagaccaatagaaagtgacagcccggcatgtttcaacggaccaatAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCa                                                                                                                                                                                              >  2:8873‑M1/48‑90 (MQ=255)                                                                                                                                                                                                                                      tAGTGAAAGTGTTGGCTCCTGGGTTTTTCTTCCGCCGGGACATTAAAACGcc                                                                                                                                                                                                                                  <  1:511757/52‑1 (MQ=255)                                                                                                                                                                                                                                        gtgtAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTNGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCg  <  1:677718/274‑1 (MQ=255)                                                                                                                                                                                                                                           aaaGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCa                                                                                                                                                                                                                    >  2:329067/1‑61 (MQ=255)                                                                                                                                                                                                                                            aaGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCaa                                                                                                                                                                                             >  1:41581/1‑83 (MQ=255)                                                                                                                                                                                                                                            aaGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCaa                                                                                                                                                                                             >  1:308656/1‑83 (MQ=255)                                                                                                                                                                                                                                               tgtTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGt                                                                                                                                                                                                                <  1:329073/61‑1 (MQ=255)                                                                                                                                                                                                                                                gtTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATtga                                                                                                                                                                                         <  2:41580/83‑1 (MQ=255)                                                                                                                                                                                                                                                gtTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATtga                                                                                                                                                                                         <  2:308651/83‑1 (MQ=255)                                                                                                                                                                                                                                                                       gCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGAtt                                                                                                                                                                                                      >  1:534645/1‑47 (MQ=255)                                                                                                                                                                                                                                                                       gCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGaa                                                                                                                                                                                     >  1:361745/1‑64 (MQ=255)                                                                                                                                                                                                                                                                           ggACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTaa                                                                                                                                                                                                  <  2:534636/47‑1 (MQ=255)                                                                                                                                                                                                                                                                           ggACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTg                                                                                                                                                                                 <  2:361738/64‑1 (MQ=255)                                                                                                                                                                                                                                                                               aTTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTc                                         >  1:679001/1‑196 (MQ=255)                                                                                                                                                                                                                                                                                 tAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAAc                                                                                                                                                                                                 >  1:381476/1‑42 (MQ=255)                                                                                                                                                                                                                                                                                   AAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGtt                                     >  2:678987‑M1/1‑196 (MQ=255)                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                       TCGCTGTCGAAAAGTTTTGCCAGTGGCAATCATGATGAATACAACCGTTTGATGGACTGGGGGTTGCGTCTTTGTTTCCTGTTGGCGCTGCCGAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCG  >  CP009273/1124162‑1124666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.