New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1124436 =	31 (0.770)	8 (0.210)	5/292	NT	26.6%	coding (1142/1536 nt)	murJ	putative peptidoglycan lipid II flippase
	?	CP009273	1124498 =	15 (0.400)					coding (1204/1536 nt)	murJ	putative peptidoglycan lipid II flippase

GAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAGGTATGTTACATATCATGCCGGAGTGGTCATTGGGTACCATGCCCTGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTACT  >  CP009273/1124254‑1124771                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                  gtctgtggtggggTTGGGCATTCTTTCTGGTCCGTTGACCGGTGCGGTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCATACTCGGTGGGTTTCGTTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTGGAAACATGCCGGGCTGTCa                                                                                                                                                                                                                                                      <  1:583082/262‑1 (MQ=255)                                                            gTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTTTCAATTTCTATTGGTCTGGCGGCGTGGCTGAATGCTTCGCGGCTTTACTGGCGGTGGCggag                                                                                                                                                                                           >  2:677704/1‑271 (MQ=255)                                                                 tttcgcgcgTTTGTTGCGCTGATGACCCATCGGGCGTTAATTGCCTACTCGGTGGGGTTGATTTGCCTGTATGTAGTGAAATTTTTGGCTCCTGGCTTTTATTCCCTCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGaa                                                                                                                                                                                     <  2:708491/270‑1 (MQ=255)                                                                    aCCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGTTCTGGCGGCGGGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTACGTAGgaaa                                                                                                                                                                                   >  2:728908/1‑274 (MQ=255)                                                                          tttGATGCGCTGATGACCCAGCGGGCGTTAATTTCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGACTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTa                                                                                                                                                                             <  1:728922/274‑1 (MQ=255)                                                                                                                                 gCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTgg                                                                                                                                                                                                                                                                               >  1:397112/1‑121 (MQ=255)                                                                                                                                     gATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCg                                                                                                                                                                                                                                                                           <  2:397105/121‑1 (MQ=255)                                                                                                                                            gtgtAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTNGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCg                                                                                                           <  1:677718/274‑1 (MQ=255)                                                                                                                                                                                   aTTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTc                                                                                                                                                  >  1:679001/1‑196 (MQ=255)                                                                                                                                                                                       AAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGtt                                                                                                                                              >  2:678987‑M1/1‑196 (MQ=255)                                                                                                                                                                                                     aTTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAAt                                                                                                                                                                                                                        >  1:364453/1‑108 (MQ=255)                                                                                                                                                                                                         ccATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCtt                                                                                                                                                                                                                    <  2:364446/108‑1 (MQ=255)                                                                                                                                                                                                          tgcgttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTggc                                                                                                                                                                                                                                     >  2:8873‑M2/44‑90 (MQ=255)                                                                                                                                                                                                          tgcgttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCgt                                                                                                                                                                                                                                >  2:479084‑M2/44‑95 (MQ=255)                                                                                                                                                                                                          tgcgttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGc                                                                                                                                                                                                                      >  1:135701‑M2/44‑105 (MQ=255)                                                                                                                                                                                                          tgcgttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGc                                                                                                            >  1:182717‑M2/44‑211 (MQ=255)                                                                                                                                                                                                              ttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGgcggcg                                                                                                                                                                                                                                 <  1:8873‑M2/51‑1 (MQ=255)                                                                                                                                                                                                              ttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCt                                                                                                                                                                                                                            <  1:479093‑M2/56‑1 (MQ=255)                                                                                                                                                                                                              ttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCg                                                                                                                                                                                                                  <  2:135700‑M2/66‑1 (MQ=255)                                                                                                                                                                                                              ttaaaatcagcgtaacgatggcaattttcactggcgtttATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGc                                                                                                        <  2:182715‑M2/172‑1 (MQ=255)                                                                                                                                                                                                                 aCGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTg                                                                                                                                                                                                                                       >  2:196980/1‑81 (MQ=255)                                                                                                                                                                                                                     tGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTggcgg                                                                                                                                                                                                                                   <  1:196982/81‑1 (MQ=255)                                                                                                                                                                                                                     tGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGc                                                                                                            <  1:347245/200‑1 (MQ=255)                                                                                                                                                                                                                             aCGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACttt                                                                                                                                                                                                                                                  >  2:313451/1‑58 (MQ=255)                                                                                                                                                                                                                                 aaTTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTAt                                                                                                                                                                                                                                              <  1:313456/58‑1 (MQ=255)                                                                                                                                                                                                                                                cgtttATTGGTCCGTTGAAACATGCCGGTCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGc                                                                                                                               >  1:530170‑M2/6‑154 (MQ=255)                                                                                                                                                                                                                                                    tATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTa                                                                                                                           <  2:530161‑M2/153‑1 (MQ=255)                                                                                                                                                                                                                                                    tATTGGTCCGTTGAAACATGCCGGGCGGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGGGCTTTTAGGTATNTTACATATNATGCCGGAGTGGTCATTGGGTACCATGCCCTGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGGGTGCCGCGTACt  >  1:473930‑M2/2‑275 (MQ=255)                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                  GAGTGCGGTTGCGTTGGGCATTCTTTCCGGTCCGTTGACCGTTTCGCTGTTCCAGTACGGTAAATTTACCGCGTTTGATGCGCTGATGACCCAGCGGGCGTTAATTGCCTACTCGGTGGGTTTGATTGGCCTGATTGTAGTGAAAGTGTTGGCTCCTGGCTTTTATTCCCGCCAGGACATTAAAACGCCAGTGAAAATTGCCATCGTTACGCTGATTTTAACGCAATTGATGAACCTGGCGTTTATTGGTCCGTTGAAACATGCCGGGCTGTCACTTTCTATTGGTCTGGCGGCGTGTCTGAATGCTTCGCTGCTTTACTGGCAGTTGCGTAAGCAGAAAATCTTTACCCCGCAACCCGGCTGGATGGCGTTTCTGTTGCGTCTGGTGGTGGCGGTACTGGTGATGTCTGGCGTGCTTTTAGGTATGTTACATATCATGCCGGAGTGGTCATTGGGTACCATGCCCTGGCGTTTACTGCGTTTAATGGCGGTCGTGCTGGCGGGGATTGCCGCGTACT  >  CP009273/1124254‑1124771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.