New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1422232	36 (0.900)	3 (0.080)	3/292	NT	7.8%	noncoding (820/1196 nt)	IS5	repeat region
	?	CP009273	= 1422351	37 (0.980)					noncoding (701/1196 nt)	IS5	repeat region

TTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGAT  >  CP009273/1422091‑1422611                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                      ttCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCAAATCCACCGCGGCCAGCTCCTCGCGCCGTGGCGCTCCTTGGTAGCCACACTCGTCTGGTACAAATTGATCCCCGCTAtgaagcagatcac                                                                                                                                                                                                                                                          <  1:279292‑M2/274‑14 (MQ=255)                     ggCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCATATTACCCAACTGATTGAGGTCATGcc                                                                                                                                                                                                                                     >  1:321050/1‑274 (MQ=255)                                        agCCTCTTGTTGTTGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTTTTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGNCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGAc                                                                                                                                                                                                                  <  1:623975/274‑1 (MQ=255)                                                gatgatGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGCCAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGACATGCTCGTTGGCCGCGGTGGTGACCAGGCtg                                                                                                                                                                                                           >  1:44479/1‑274 (MQ=255)                                                                                        gCTTTCATGTATTCGTTGTTGATTACCGTGTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCACCCAGTCCACATCCACCTCGGCCAGCTCCTCCCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAtga                                                                                                                                                                                                                                                                    <  1:516217‑M2/177‑4 (MQ=255)                                                                                                gTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCTGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACGAATGTGGGCCTTCATGCCa                                                                                                                                                           <  1:592857/274‑1 (MQ=38)                                                                                                  aTTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGCTTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTNATTGAGGTNATGCTCGTTGGCCGCGGTGGTGACCGGGCTGTGGGTCAGGCCACACTTGGCATCGACACCAATGATGGCCTTCATGCCaaa                                                                                                                                                         >  1:478014/1‑274 (MQ=255)                                                                                                        tGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGc                                                                                                                                                                                                                                                     >  2:169287/1‑176 (MQ=255)                                                                                                          ttGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCTACTg                                                                                                                                                <  1:5202/275‑1 (MQ=38)                                                                                                            gATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGAt                                                                                                                                                                                                                                                 <  1:169289/176‑1 (MQ=255)                                                                                                             aTGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCa                                                                                                                                                                                                                                                                       >  1:540638/1‑153 (MQ=255)                                                                                                                tccGTTTTGTTCTTGCGCTGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCCCCNCGGCCAGCNCCTCGCGCTGTGACGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCTATGTGGGACTTCATGCCAAAGTGCCACTGATTGc                                                                                                                                           <  1:477997/273‑1 (MQ=255)                                                                                                                 ccGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAtgaa                                                                                                                                                                                                                                                                   >  2:540628‑M2/1‑149 (MQ=255)                                                                                                                  cGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATTTGGGCCTTCATGCCAAAGTGCCACTGATTGCCtt                                                                                                                                        >  1:93765/1‑275 (MQ=38)                                                                                                                  cGTTTTCTTCTTACGCGCATTCTGCTTCAAGGCTTTTACCTTGCCGCGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGTTCATCTCCTCGCGCGGTGGCGCCCATTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGCTGGCACCAGCGTTGACCAGGCGGTGGGAGAGGCGACTCTTGGCATCGCAACGCATGTTGGCCTGCATGCCACAGCGCCACGGATGGCCtg                                                                                                                                        >  2:19932/1‑274 (MQ=11)                                                                                                                              gcgcGGATTCTGCTTCCAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGGTGTGGGTCAGGCCACTCTTGGCATCGACCCCAATGTGGGCCTACATGCCAAAGTGCCACTACTTGCCTTTCTTGGTCTGa                                                                                                                             >  1:239561/1‑274 (MQ=255)                                                                                                                                  ggATTCTTCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCGGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCAt                                                                                                                                                                                     <  1:54125/214‑1 (MQ=255)                                                                                                                                              aaGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGATCGGTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCATTTCTTGGTCTGATGCaacacgcaaac                                                                                                               >  1:601136/1‑262 (MQ=255)                                                                                                                                                     gtaCCTTGCCGGGCCGCCCGCCGTCCAGTCAGTCCCCTTCCACCTCCGCCAGTTCATCGCGCTGTTGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGATCCTCTCCAtgaagcagaagccgcgcaagaacaaaacggccatcaacgtcgaatacatgaaagccagcatccgcgccagggtggagcacccgtttcgcatcatcaagcggcagttcggcttcgtgaaagccagatacaaggggctgctgaaaaacgataaccaactggcga                                                                                                     >  2:740061‑M2/2‑113 (MQ=255)                                                                                                                                                           tGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAtgaagcagaatccgcgcaagaacaaaacgaccatcaacatcgaatacatgaaagccagcatccgtgccagggtggagcacccgtttcgaatcatcaagcggcagttcggcttcgtgaaagccagatacaaggggctactgaaaaacgaaaaccaactgacgatgttat                                                                                               <  1:740075‑M2/275‑169 (MQ=255)                                                                                                                                                           tGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCCCTCCATGCAGCCGATTACCCAGCAGATTGAGGTCCTGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGTTCAGGCCACTCTTGGCATCGACCCCAATCTTCGCCTTCATGCCAAAGCTACCCTGCCTGCCTTTCCTGGTCTG‑CGCCACTCACGGACCGTGTTTCTGCTCtttt                                                                                              >  2:724857/1‑274 (MQ=11)                                                                                                                                                            gCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTCGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGACGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGTCTTTCTTGGTCTTATGCATCTC‑CTGATCGCGTTGCTGCTCTTTGt                                                                                             >  1:53955/1‑275 (MQ=16)                                                                                                                                                                  aCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCNCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCAGCTCTTTGTTCTTgg                                                                                       <  1:502366/275‑1 (MQ=17)                                                                                                                                                                            aTCAGACGGTCCACATCCCCCTCCGCCAGCTTCTGGCGTGTTGGCGGTCCTTGGTAGCCGGCATGGGTTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCCCTCTTGGCATCGACACCAATGTGGGCCTACATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTgg                                                                              <  2:239558/274‑1 (MQ=11)                                                                                                                                                                                    gTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAtga                                                                                                                                                                                                                                                                    >  1:233544‑M2/1‑82 (MQ=255)                                                                                                                                                                                    gTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAtga                                                                                                                                                                                                                                                                    <  2:571617‑M2/85‑4 (MQ=255)                                                                                                                                                                                        acaTCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAtgaagca                                                                                                                                                                                                                                                                >  1:571630‑M2/1‑78 (MQ=255)                                                                                                                                                                                                   ggCCAGCTCCTCGCGCTGTGGCGCTCCCTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCtg                                                                                                                                                                                                           >  1:421110/1‑127 (MQ=25)                                                                                                                                                                                                    gCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTGTCTTGGTCTGATGCATCCC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATccac                                                     >  1:337274/1‑275 (MQ=21)                                                                                                                                                                                                    gCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACGCTTGGCATCGACNCCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATTGTGGCATccac                                                     >  1:611127/1‑275 (MQ=21)                                                                                                                                                                                                       aGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTggg                                                                                                                                                                                                       <  2:421103/127‑1 (MQ=35)                                                                                                                                                                                                              cgcgCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCCTGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCcgcg                                                                                                                                                                                                                          >  1:3428/1‑101 (MQ=25)                                                                                                                                                                                                                  cTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCggtgg                                                                                                                                                                                                                      <  2:3428/101‑1 (MQ=35)                                                                                                                                                                                                                   tgtgGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCAtgaagcagaatccgcgcaagaacaaaacggccatcaacatcgaatacatgaaagccagcatccgtgccagggtggagcacccgtttcgcatcatcaagcggcagttcggcttcgtgaa                                                                                                                                                 <  1:108229‑M2/169‑119 (MQ=255)                                                                                                                                                                                                                               tGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTg                                                                                                                                                                                         >  1:632709/1‑117 (MQ=32)                                                                                                                                                                                                                                   aGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCAt                                                                                                                                                                                     <  2:632695/117‑1 (MQ=32)                                                                                                                                                                                                                                       ggCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGcc                                                                         >  2:665892/1‑220 (MQ=32)                                                                                                                                                                                                                                         cATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGa                                                                                                                                               >  2:603867/1‑149 (MQ=32)                                                                                                                                                                                                                                           tCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCaa                                                                     <  1:665906/220‑1 (MQ=32)                                                                                                                                                                                                                                             ggCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGc                                                                                                                                           <  1:603880/149‑1 (MQ=32)                                                                                                                                                                                                                                                       aaTTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGATCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCACAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGa   <  1:704291/274‑1 (MQ=25)                                                                                                                                                                                                                                                        aTTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGc                                                                                 >  1:98558/1‑195 (MQ=33)                                                                                                                                                                                                                                                        aTTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTTAATGAtggt                                                              >  2:710009/1‑214 (MQ=17)                                                                                                                                                                                                                                                        aTTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGGCGCCTGGTTCGGCCCGCCCGCGATTGag  >  2:195025/1‑273 (MQ=255)                                                                                                                                                                                                                                                            ctcctcTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCa                                                          <  1:710023/214‑1 (MQ=32)                                                                                                                                                                                                                                                            ctcctcTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGgccagcca           <  1:195027/261‑1 (MQ=35)                                                                                                                                                                                                                                                            ctcctcGCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTggg                                                                             <  2:98557/195‑1 (MQ=18)                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                      TTCAGCAGCCCCTTGTATCTGGCTTTCACGAAGCCGAACTGCCGCTTGATGATGCGAAACGGGTGCTCCACCCTGGCACGGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGCGGATTCTGCTTCAAGGTTTTTACCTTGCCGGGACGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCAGCTCCTCGCGCTGTGGCGCTCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGAAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCATCTC‑CGGATCGCGTTGCTGCTCTTTGTTCTTGGTAGAGCTGGGTGCCTCAATGATGGTGGCATCCACCAAAGTGCCTTGGGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGAT  >  CP009273/1422091‑1422611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.