New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2946067	76 (1.890)	4 (0.100)	4/296	NT	5.4%	coding (3296/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit
	?	CP009273	= 2946203	68 (1.770)					coding (3160/3543 nt)	recB	exonuclease V (RecBCD complex), beta subunit

ATAAATAACGCCGCCAAAGTGGTGCTCATAGTCGTAATCAGCAATGCGATGGCGCAGATAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGTTCGGGTCAACCGGCTGGGTAAAATC  >  CP009273/2945943‑2946476                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                  ataaataaCGCCGCCAAAGTGGTGCTCATAGTCGTAATCAGCAATGCGATGGCGCAGATAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGCGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACCCCAGCGGCGGGAAGc                                                                                                                                                                                                                                                                     >  1:344635/1‑275 (MQ=255)           ccgccAAAGTGGTGCTCATAGTCGTAATCAGCAAAGCGATGGCGCAGATAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAANAACGCCCTNCGTGGCGTAACACAAGGTCGATAAAGCATTTTAACATGCCACTTAACTGCATGAACTCCAGCGGAGGGCAGCCTGCGGAAAg                                                                                                                                                                                                                                                           >  1:492459/1‑275 (MQ=255)                               gTCGTAATCAGCAATGCGATGGCGCAGATAACGATGCAGCGTCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTa                                                                                                                                                                                                                                       <  1:67366/275‑1 (MQ=255)                                               cGATGGGGCAAGTAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCCGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGAc                                                                                                                                                                                                                        <  1:584863/274‑1 (MQ=255)                                                                         cAGGGTATAAAGCTGATATTGCCGATCATAGCGGTGT‑GCCTGCATGGCCGCTGCCATAGCCTGTGGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGc                                                                                                                                                                                              <  1:385472/274‑1 (MQ=255)                                                                                     cgggtatTGCAGATCATGGC‑GTGTGGCCTGCATTGCCTCGGCCATAGCTGGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTAGAGTCGAGCAGGTAATAACGCCCGTCGGGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACt                                                                                                                                                                                    <  2:699554/268‑1 (MQ=255)                                                                                        atatTGCAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGCTAAAGCCTTTTAACCTGCCACGTACCTGCATGAACTCTCGCGGCGGGCAGCCCGCGGACAGCGGGTCAAACTGGCGGAGTAACGTATCAAGCGGACCGTGGATACGCGGATGACTCATTCGCAGAGCAAACTCCCtcc                                                                                                                                                                              >  2:238562/1‑274 (MQ=255)                                                                                              cAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAg                                                                                                                                                                                            >  1:430201/1‑255 (MQ=255)                                                                                                       gCGGTTT‑GCCTGCATTGCCGCTGCCATAGGCTGGTGTGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGCTTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATGAAGCCTGTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTg                                                                                                                                                                <  1:445576/274‑1 (MQ=255)                                                                                                          gtgt‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggc                                                                                                                                                                                                                                                                            <  2:574740‑M2/163‑8 (MQ=255)                                                                                                           tgt‑gCCTGCATTTCTGCTGCCATAGCCTGTTGGGAGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCTAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACTTCCCACGAACCTGCATGAACTCCACCGGCGGgccgcc                                                                                                                                                                                                                                                                    >  2:553229/1‑170 (MQ=255)                                                                                                             t‑gCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGAGAAACGTAACAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTACAACTCCACCTGTTTATTacgggcg                                                                                                                                                          >  1:687196/1‑274 (MQ=255)                                                                                                             gtcacttccttcccGCTGCCATAGCCTTTTGGGTGTAAGCCGAACTGTCCTCACCCAACCAGTTGGATTTATAGGCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCCCGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTgcgggc                                                                                                                                                           <  2:687182/262‑1 (MQ=255)                                                                                                               gCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGc                                                                                                                                                                                                                                                                        <  1:574753/163‑1 (MQ=255)                                                                                                                ccTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACACCACCCCAACCTGGTTATTGCGGGGGGaa                                                                                                                                                       >  2:717126/1‑275 (MQ=255)                                                                                                                ccTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTCCATGAACTCCACCGGCGGGCAGCCTGCg                                                                                                                                                                                                                                                                <  1:553240/170‑1 (MQ=255)                                                                                                                  tGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTNTCTTCACCNAACCAGTTGGATCTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATGAAGCTGACTGGCGATAAGCGGTTCACTAATCGGc                                                                                                                                                                                              <  1:486286/234‑1 (MQ=255)                                                                                                                    cATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTACTAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGt                                                                                                                                                    <  1:717140/274‑1 (MQ=255)                                                                                                                                       tGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTa                                                                                                                                                                   >  1:142455/1‑240 (MQ=255)                                                                                                                                        ggtGGGTGTAAGCCGAACTGTATTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGAGGAACACCAGGTCGATNAAGCCTTTTAACAGGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCTGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACGCAGGCTTACGCCGGtt                                                                                                                               <  1:551821/273‑1 (MQ=255)                                                                                                                                         ttGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcatc                                                                                                                                                                                                                    <  1:278979‑M2/189‑64 (MQ=255)                                                                                                                                           gggTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTgc                                                                                                                                                               <  2:142454/240‑1 (MQ=255)                                                                                                                                             gtgtAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACNAGGTCGATNAAGCCTTTTAACTTGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATCGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGtt                                                                                                                               <  1:476292/270‑1 (MQ=255)                                                                                                                                             gtgtAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcatcgtta                                                                                                                                                                                                                >  2:278974‑M2/1‑122 (MQ=255)                                                                                                                                               gtAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggc                                                                                                                                                                                                                                                                            <  1:697104‑M2/127‑8 (MQ=255)                                                                                                                                                 aaGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCTGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTgaga                                                                                                                      <  1:696434/275‑1 (MQ=255)                                                                                                                                                   gCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGc                                                                                                                                                                                                                                                                        <  2:697090/127‑1 (MQ=255)                                                                                                                                                    ccGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGt                                                                                                                   <  1:238565/275‑1 (MQ=255)                                                                                                                                                      gAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATaaaa                                                                                                                                                                                      >  2:166666/1‑206 (MQ=255)                                                                                                                                                        aCTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCgg                                                                                                                                                                                                                                           >  2:427659/1‑151 (MQ=255)                                                                                                                                                        aCTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTaa                                                                                                                                                                                                   >  1:150703/1‑191 (MQ=255)                                                                                                                                                        aCTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAACACTCCATCTACACCTCTTTATTGCGGGCGGAAAGTTTACTAAGGCTTACGCCTTTTCCATTGAGACGTGCCt                                                                                                               >  1:282164/1‑275 (MQ=255)                                                                                                                                                          tGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTcc                                                                                                                                                                                  <  1:166668/206‑1 (MQ=255)                                                                                                                                                            tCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTa                                                                                                                                                                                                                                       <  1:427666/151‑1 (MQ=255)                                                                                                                                                            tCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCgg                                                                                                                                                                                               <  2:150702/191‑1 (MQ=255)                                                                                                                                                                 aCCCATCCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAAt                                                                                                                                                                                                  >  1:351746/1‑183 (MQ=255)                                                                                                                                                                 aCCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTAt                                                                                                                                                                                                                                 >  2:439052/1‑152 (MQ=255)                                                                                                                                                                     atccAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGc                                                                                                                                                                                              <  2:351740/181‑1 (MQ=255)                                                                                                                                                                     aaCCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAg                                                                                                                                                                                                                             <  1:439059/152‑1 (MQ=255)                                                                                                                                                                      aCCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCaaa                                                                                                                                                                                                                                                  >  2:610492/1‑130 (MQ=255)                                                                                                                                                                          gTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTgg                                                                                                                                                                                                                                              <  1:610505/130‑1 (MQ=255)                                                                                                                                                                             ggATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcgg                                                                                                                                                                                                                                                                             <  2:233849‑M2/96‑7 (MQ=255)                                                                                                                                                                              gtttaagtgTCGAGCACGTAAAATCGCCCTCCGTGGCGAAACACCATGTCGTTAAAGCCTTTTAACATGCCACGTACCTGCATGAGCTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACt                                                                                          <  2:96460/266‑1 (MQ=255)                                                                                                                                                                                 ttATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcatcgttatctgcgccatcgcattgctgattacgactatgagcaccactttggcggcgttatttatctgttcctgcgtggcgttgataaagaacatccgca                                                                                                                   <  2:143938‑M2/246‑161 (MQ=255)                                                                                                                                                                                 ttATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCggg                                                                                                                                                                                                                                                                         <  1:233851/96‑1 (MQ=255)                                                                                                                                                                                  tatggtgcggCAGGGAATAACGCCCTCCGTCGTGGAACACTAGTTTGATAAAGCCTTTTAACATGCCACGTACCTGCATGACCTCCAGCGGNGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTc                                                                                     <  1:527751/266‑1 (MQ=255)                                                                                                                                                                                   ataGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGGCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATNTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTTAGAGGTGCATGGAGGACAGCCGTGATCAACTCgga                                                                                      >  1:557647/1‑272 (MQ=255)                                                                                                                                                                                     aGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCcagcggcaatgcaggcacaccgctatgatctgcaatatcagctttataccctggcgctgcatcgttatctgcgccatcgcattgctgattacgactatgagcaccactttggcggcgttatttatctgttcctgcgtggcgttgataaagaacatccgcaacag                                                                                                               >  1:143939‑M2/1‑82 (MQ=255)                                                                                                                                                                                      ggcgcccAGGTAATAACGTCCTTCGTTGCGTATCTCCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCGGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATa                                                                                 <  1:48836/269‑1 (MQ=255)                                                                                                                                                                                        cGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGCCTAAGGCTTACGCCGCTTTCATTGAGAGGTGCCTGGAGGACAGCCGGGATCCACCAGGTccacac                                                                                >  2:724524/1‑269 (MQ=255)                                                                                                                                                                                         gAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTAACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTAGGTCAAAAcac                                                                              >  1:96461/1‑273 (MQ=255)                                                                                                                                                                                          aGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCCTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTc                                                                                                                                                                                   >  1:693695/1‑173 (MQ=255)                                                                                                                                                                                              ggTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCAtc                                                                                                                                                                               <  2:693681/173‑1 (MQ=255)                                                                                                                                                                                                        cccTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCaa                                                                                                                                                                                                                                                   >  1:645080/1‑95 (MQ=255)                                                                                                                                                                                                         ccTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCgg                                                                                                                                                                                                                                                               >  1:7412/1‑82 (MQ=255)                                                                                                                                                                                                         ccTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGTGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGa                                                                                                                                                                                                                  >  1:332908/1‑127 (MQ=255)                                                                                                                                                                                                         ccTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGAGATCCACTCGGTCAATACCGGTTACCCCTGCGAtt                                                               >  1:181456/1‑274 (MQ=255)                                                                                                                                                                                                           ttCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTgcgggcgg                                                                                                                                                         >  1:639752/1‑182 (MQ=255)                                                                                                                                                                                                            tCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTg                                                                                                                                                                                                                                               <  2:645066/95‑1 (MQ=255)                                                                                                                                                                                                             cGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAg                                                                                                                                                                                                                                                           <  2:7412/82‑1 (MQ=255)                                                                                                                                                                                                             cGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGTGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAg                                                                                                                                                                                                              <  2:332902/127‑1 (MQ=255)                                                                                                                                                                                                             cGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTggagga                                                                                                         <  1:96536/228‑1 (MQ=255)                                                                                                                                                                                                               tGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAg                                                                                                                                                     <  2:639738/182‑1 (MQ=255)                                                                                                                                                                                                                   ggAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTgg                                                                                                                                                                                                                                              >  2:189247/1‑89 (MQ=255)                                                                                                                                                                                                                     aaCACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCAtct                                                                                                                                                                              >  2:480233/1‑151 (MQ=255)                                                                                                                                                                                                                       cacCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGa                                                                                                                                                                                                                                          <  1:189249/89‑1 (MQ=255)                                                                                                                                                                                                                         ccAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTTATCGGCAGATAAAACTCCATCTCCAc                                                                                                                                                                          <  1:480242/151‑1 (MQ=255)                                                                                                                                                                                                                            ggTCGATAAAGCCTTTAAACATGCCACGAACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTgg                                                                                                                                                                                                                     >  1:548398/1‑105 (MQ=255)                                                                                                                                                                                                                                gATAAAGCCTTTTAACATGCCACGTACCTGCAGGAACTCCAGCGTCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGAGTATCGTATCAAGCTGACTGGCTAt                                                                                                                                                                                                                 <  2:548387/105‑1 (MQ=255)                                                                                                                                                                                                                                       ccTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCAAtc                                                                                                                                                                               >  1:121644/1‑132 (MQ=255)                                                                                                                                                                                                                                           ttAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCAATCTCCa                                                                                                                                                                           <  2:121643/132‑1 (MQ=255)                                                                                                                                                                                                                                                 tGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCCAACTGGCGGATTAACGTATCAAGATGACTGGCGATAAGCGGCTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGACAGTTGACTCAGGCTCACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGAACCACTCGGTCAATAACGGCTCCCACTGCGCTCCAACGCGGCCCAGTTCCAGTTTTTCCCGCACCCCGTTCgtg                      >  2:12929/1‑273 (MQ=255)                                                                                                                                                                                                                                                     aCGTACCTGCATGAACTCCAGNGGCGGGCANCCTGCGGATAGCTGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGTCTGGAGGACAGCCGTGATCCACTCGGTCAATAcc                                                                               <  1:497632/214‑1 (MQ=255)                                                                                                                                                                                                                                                         aCCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGt                                                                                                                                                                                                                                   >  2:702460/1‑62 (MQ=255)                                                                                                                                                                                                                                                            tGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTc                                                                                     >  2:50595/1‑201 (MQ=255)                                                                                                                                                                                                                                                             gCATGAACTCCAGCTGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCa                                                                                                                                                                                                                               <  1:702474/62‑1 (MQ=255)                                                                                                                                                                                                                                                              cATGAACTCCAGCGGCGGGCAGCGAGCGCATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCNGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGTTCGGTCCAACCGGCTggg         >  1:500948/1‑275 (MQ=255)                                                                                                                                                                                                                                                                tGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATa                                                                                 <  1:50596/201‑1 (MQ=255)                                                                                                                                                                                                                                                                   aCTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCACTTCGGGTCAACCGGCTGGGTaaa     >  1:76696/1‑274 (MQ=255)                                                                                                                                                                                                                                                                     tCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGATTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCCGTGCGGGGCAACCGGACGGGAaaaaag  >  2:729415/1‑273 (MQ=255)                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                                                  ATAAATAACGCCGCCAAAGTGGTGCTCATAGTCGTAATCAGCAATGCGATGGCGCAGATAACGATGCAGCGCCAGGGTATAAAGCTGATATTGCAGATCATAGCGGTGT‑GCCTGCATTGCCGCTGCCATAGCCTGTTGGGTGTAAGCCGAACTGTCTTCACCCAACCAGTTGGATTTATAGTCGAGCAGGTAATAACGCCCTTCGTGGCGGAACACCAGGTCGATAAAGCCTTTTAACATGCCACGTACCTGCATGAACTCCAGCGGCGGGCAGCCTGCGGATAGCGGGTCAAACTGGCGGATTAACGTATCAAGCTGACTGGCGATAAGCGGTTCACTAATCGGCAGATAAAACTCCATCTCCACCTGTTTATTGCGGGCGGAAAGTTGACTCAGGCTTACGCCGGTTTCATTGAGAGGTGCCTGGAGGACAGCCGTGATCCACTCGGTCAATACCGGTTCCCACTGCGATTCAAAGCCGCCGAGTTCCAGTTTTTCCCGCACCCAGTTCGGGTCAACCGGCTGGGTAAAATC  >  CP009273/2945943‑2946476

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.