New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3210755	57 (1.420)	3 (0.080)	3/302	NT	5.1%	coding (618/624 nt)	yqjI	PadR family putative transcriptional regulator
	?	CP009273	= 3210920	NA (NA)					coding (1516/1521 nt)	aer	fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component

TTTAAAGCGGTGCTGGATTTACGCGTCAACCAGAGCGATATCAGTGATGCACAAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCCACAATATCTTCCATCGTCCGTCCGGCGGCGTGTACCTGCTGCGAACCGGATTGCACCTTATC  >  CP009273/3210648‑3211190                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                               tttAAAGCGGTGCTGGATTTACGCGTCAACCAGAGCGATATCAGTGATGCACAAATAAAAAAGATCATTGCGGTGATCGACNGCGCCGCTNTTGATATTACGCTACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGc                                                                                                                                                                                                                                                                               >  1:475134‑M2/1‑273 (MQ=255)                                 gaccGATATCAGTGATGAACAAATAAAAAAGTTCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGgcg                                                                                                                                                                                                                                              <  1:15893/272‑1 (MQ=255)                                                tGCACAAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCT‑CAACCGCCGGATCCGGCATACCGATTAATACAGTACCGTCACCGCGTCTTCCAGTCGGCGTGCGCTGTGTTTCCCCacc                                                                                                                                                                                                                               >  2:620055/1‑272 (MQ=255)                                                 gCACAAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCCACACCCGCTAAACCCCCCGCACGCCTGATAAGATGCGCCCGCATCGCCCCCGGCATTGTGCTCCAACCGACCGGTCCGGCATACCGACTCATGCACTACCGGCCCCGCGCCGCCCCGTCCGCTGCGCCGGTGGTTCAcgccc                                                                                                                                                                                                                               >  2:640521/1‑270 (MQ=255)                                                      aaTAAAAAAGATCATTTCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCNGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCT‑CAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGaca                                                                                                                                                                                                                        <  1:620068/275‑1 (MQ=255)                                                       agaaaaaaGATAATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGCCGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGaca                                                                                                                                                                                                                        <  1:24812/273‑1 (MQ=255)                                                               gATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCCCATCAGTCATTGTGCTCCANCCGCCGGANCCGGCATACCGATTAATGCAGTACCGTCACCGTGTCTTCCAGTCGGCTGGCGCGTGCTTTCCCCATCCCCGCCACCTgcgc                                                                                                                                                                                                                 >  1:476091/1‑274 (MQ=255)                                                                                    cgccgcTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCAGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCCTCTTCCAGTCGGCTg                                                                                                                                                                                                                                                 >  1:158357/1‑221 (MQ=255)                                                                                                 atTACGCACCTGGATTAATCGCCCCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGCCGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGa                                                                                                                                                                              <  1:607209/275‑1 (MQ=255)                                                                                                   aacgccataggATTAATCTCCCCATCCGCCAGTGCCGCGGTGCAATTGCTGTAGGCGACGCTTGACGCGCCTTATCCCGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGAt                                                                                                                                                                             <  1:261814/265‑1 (MQ=255)                                                                                                                                        cgGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACGCTCTTCCACCCGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGaaa                                                                                                                                       >  1:82312/1‑275 (MQ=255)                                                                                                                                                     ggATGCGACGCTTGACTCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGCTTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCCACCCCTGCGCACTCTCTTCCACCAGCCCGGCATTTTTCTGGCTGATc                                                                                                                                                                            >  1:244357/1‑225 (MQ=255)                                                                                                                                                     ggATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGcagttgcgtaatatcaaaagcggcgcggtcgatcaccgcaatgatcttttttatttgtgcatcactgatatcgctctggttgacgcgtaaatccagcaccgctttaaaattatccagcgcccgcttcatttgcgggttctggcgcagcgc                                                                                                                          <  1:259238‑M2/275‑151 (MQ=255)                                                                                                                                                                        ccTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTGCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCt                                                                                                        >  1:727849/1‑274 (MQ=255)                                                                                                                                                                             tCCGGCCTACACCCGCTACACACCCCGCAGGCCTTATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCATCCACCAGCTCGGCATTTTTCTGGGTGATCAg                                                                                                                                                                          >  1:457898/1‑203 (MQ=255)                                                                                                                                                                                 gCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTa                                                                                                                                                                      <  2:457891/203‑1 (MQ=255)                                                                                                                                                                                 gCCTACACCCGCTACACACCCCGCAGGCATGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATNTTTCTGGTTGCTCAGGTTCAGCTCATCCACTGCACGGGTCAGGCTGGCACACCCATCGGCCTCTTCCAGCGTTGCATGGCTAATCTGGGc                                                                                               >  1:532959/1‑274 (MQ=255)                                                                                                                                                                                        ccgcacaccccccccACAGGCCGCATAAGCTGCGCCAGCCTCCCATCAGGCATTGTGCTCCATCCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACt                                                                                       <  2:21683/264‑1 (MQ=255)                                                                                                                                                                                            cTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGcagttgcgtaatatcaaaagcggcgcggtcgatcaccgcaatgatcttttttatttgtgcatcactgatatcgctctggttgacgcgtaaatccagcaccgctttaaaattatccagcgcccgcttcatttgcgggttctggcgcagcgccgcgccaacgcaacgcgggttgatgatccctccaatc                                                                                     <  2:135520‑M2/273‑188 (MQ=255)                                                                                                                                                                                               acccagacccccgNCTGAGAACGTGAGCCAGCTGTGCATCAGGTCTTGGGCCCCAACCGCCTGCTCCGGCATACCCATTAATGCAGTACCGTCACCGCGTCTTCCCGTCGGCCTGCGCGGGGTTTCACCATCGCCGACCACTGCGCACTCTCGTCCACCAGATGGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGa                                                                                 <  2:532950/262‑1 (MQ=255)                                                                                                                                                                                                   ccccGCAGGCCTGATAAGATGCGATAGCTTCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTNAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGttt                                                                            >  1:505756/1‑275 (MQ=255)                                                                                                                                                                                                    cccGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTGTTCCACCAGCTNGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCCGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGAGAACAACTGGGTGACGtttt                                                                           >  1:665032/1‑275 (MQ=255)                                                                                                                                                                                                      cGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGcagttgcgtaatatcaaaagcggcgcggtcgatcaccgcaatgatcttttttatttgtgcatcactgatatcgctctggttgacgcgtaaatccagcaccgctttaaaattatccagcgcccgcttcatttgcgggttctggcgcagcgccgcgccaacgcaacgcgctttgatgcgttcttcaatcatctccacctgt                                                                         >  1:135521‑M2/1‑76 (MQ=255)                                                                                                                                                                                                      cGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTgc                                                                                                                                                                                                                   >  1:558006/1‑137 (MQ=255)                                                                                                                                                                                                      cGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCCGCGTTGAATGGCTAATCTGGGCGATc                                                                                           >  1:21684/1‑257 (MQ=255)                                                                                                                                                                                                      cGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCCCCAACCGCCGGAACCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTg                                                                                                                                                                                                                    >  2:20011/1‑136 (MQ=255)                                                                                                                                                                                                         aGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCGCATGGGCCTGTGCCAGCGTTGAAGGGCGAATCTGGGCGGTGACCTGGGTTNTGttttctc                                                                        >  2:74432/1‑270 (MQ=255)                                                                                                                                                                                                          ggCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCAc                                                                                                                                                                                                               <  2:557994/137‑1 (MQ=255)                                                                                                                                                                                                          ggCCTGATAAGACGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCa                                                                                                                                                                                                                <  1:20012/136‑1 (MQ=255)                                                                                                                                                                                                              tGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCa                                                                                                                                                       >  1:223051/1‑189 (MQ=255)                                                                                                                                                                                                              tGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGAATAATGCAGTACCGTCACCGAGTCTTCCAGTCGGCt                                                                                                                                                                                                                                                  >  2:557812/1‑98 (MQ=255)                                                                                                                                                                                                                aTAAGATGGGAAAGGATCGCATCAGGGTTTGTGCTCCAACCGCCGGATCAGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCca                                                               <  2:505747/275‑1 (MQ=255)                                                                                                                                                                                                                aTAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCa                                                                                                                                                                                                                                                                     >  1:163027/1‑77 (MQ=255)                                                                                                                                                                                                                aTAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCca                                                               <  1:319457/275‑1 (MQ=255)                                                                                                                                                                                                                  aaGATGCGCCCGCATCGCTTCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCcaca                                                             <  1:74433/275‑1 (MQ=255)                                                                                                                                                                                                                  aaGATGCGCCAGCATCGCATCAGGCATTGTGCTCCACCCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACggg                                                                                                                                                   <  2:223049/189‑1 (MQ=255)                                                                                                                                                                                                                  aaGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTATCGTCACCGCGTCTTCCAGTCGGCTGgcg                                                                                                                                                                                                                                              <  1:557824/98‑1 (MQ=255)                                                                                                                                                                                                                  aaGATGCGCCAGCACCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCcaca                                                             <  1:34488/275‑1 (MQ=255)                                                                                                                                                                                                                    gATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACcgc                                                                                                                                                                                                                                                                 <  2:163025/77‑1 (MQ=255)                                                                                                                                                                                                                     gctatacgggtcagcaccAGGCATTGTGCTCCACCCCCCGGATCCGGCATACCGATTTATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGTACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCcaca                                                             <  2:46455/259‑1 (MQ=255)                                                                                                                                                                                                                      tGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTccacc                                                                                                                                                                                                    >  2:453820/1‑136 (MQ=255)                                                                                                                                                                                                                         gcCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGNCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCcaca                                                             <  1:566854/268‑1 (MQ=255)                                                                                                                                                                                                                          ccAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCt                                                                                                                                                                                                <  1:453827/136‑1 (MQ=255)                                                                                                                                                                                                                          ccAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAAATGGGTGACGTTTTTCACCtg                                                                    >  1:117241/1‑260 (MQ=255)                                                                                                                                                                                                                                              gtgCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCCACTGGGTGACGTTTTTCACCTGTGc                                                                 >  1:46456/1‑243 (MQ=255)                                                                                                                                                                                                                                                 cTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCCTCCCCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCGAACATGGGCGATCAACTGGGTGGTCTTTTTGACTTGGGCCACAATATACTCCCTCGTCCGTCcggccgtgcgcg                              >  2:88024/1‑267 (MQ=255)                                                                                                                                                                                                                                                   ccAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCg                                                                                                                                                                                                                                                     >  1:597988/1‑58 (MQ=255)                                                                                                                                                                                                                                                    cAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCATGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCCACAATATCTTCCATCGTCCGTCCGGCGGCGTGTACct                           >  1:379934/1‑275 (MQ=255)                                                                                                                                                                                                                                                    cAACCGCCGGATCCGCCATACCGCCTAAAGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCCGGCTGGAAAGCCCATCGGCCTGTTCNCGCGTTGa                                                                                                              >  1:524280/1‑192 (MQ=255)                                                                                                                                                                                                                                                       ccgccgGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGcga                                                                                                                                                                                                                                                 <  2:597975/58‑3 (MQ=255)                                                                                                                                                                                                                                                           cgGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCt                                                                                                                                                                                                                                                  >  2:48872/1‑53 (MQ=255)                                                                                                                                                                                                                                                             gATCCGGCCTACCGAGTAATGCAGTACCTGCCCCCCGTCTTCCCGTCGGCTGGCGCGGTGTTTTACCATCGCCGGCACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGGACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCCACAATATCTTCCATCGTCCGTCCGGCGGCGTGTACCTGCTGCGaa                   <  2:727835/274‑1 (MQ=255)                                                                                                                                                                                                                                                               tCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGgcg                                                                                                                                                                                                                                              <  1:48873/53‑1 (MQ=255)                                                                                                                                                                                                                                                                           aTTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTTCCACAATATCTCCCATCGTCCGTCGTGCGGCGTGCACCTGCTGCGAACCGGATTGcgtttta    >  2:8081/1‑269 (MQ=255)                                                                                                                                                                                                                                                                            ttcaTGCAGTACCGTCACCGCTTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCCACAATATCTTCCATCGTCCGTCCGGCGGCGTGTACCTGCTGCGAACCGGATTGCACCTTAt   <  1:88025/272‑1 (MQ=255)                                                                                                                                                                                                                                                                             gactGCCGTACCGTCCCCTCGCGTTCCAGTCGGCTGTCCCGTGGTTTCCCCATCGCCGCCACCTGCCCACTTTCTTCCACCAGCGCGGCATTTTGCTGGGTGATCAGGTTAAGGTCATTCACTGCACTGGGCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTTGGCGATCAACTGGGTGACGTTTTTCACCTGTGCCACAATATCTTCCATCGTCCGTCCGGCGGCGTGTACCTGCTGCGAACCGGATTGCACCTTATc  <  2:665018/272‑1 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                               TTTAAAGCGGTGCTGGATTTACGCGTCAACCAGAGCGATATCAGTGATGCACAAATAAAAAAGATCATTGCGGTGATCGACCGCGCCGCTTTTGATATTACGCAACTGGATTAATCGCCGCATCCGCCAGTGGCGCGGTGCAATTGCCGGATGCGACGCTTGACGCGCCTTATCCGGCCTACACCCGCTACACACCCCGCAGGCCTGATAAGATGCGCCAGCATCGCATCAGGCATTGTGCTCCAACCGCCGGATCCGGCATACCGATTAATGCAGTACCGTCACCGCGTCTTCCAGTCGGCTGGCGCGGTGTTTCACCATCGCCGACACCTGCGCACTCTCTTCCACCAGCTCGGCATTTTTCTGGGTGATCAGGTTAAGCTCATCCACTGCACGGGTCAGGCTGGAAAGCCCATCGGCCTGTTCCAGCGTTGAATGGCTAATCTGGGCGATCAACTGGGTGACGTTTTTCACCTGTGCCACAATATCTTCCATCGTCCGTCCGGCGGCGTGTACCTGCTGCGAACCGGATTGCACCTTATC  >  CP009273/3210648‑3211190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.