New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3767625	26 (0.650)	6 (0.160)	4/294	NT	19.6%	noncoding (30/99 nt)	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	CP009273	= 3767659	NA (NA)					noncoding (64/99 nt)	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP271 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

TGCCCGTCTGGTGATTGGTATTGCTGCCCGTAACAACGAGCACATTCAGGTTATCACCAGCCTGACCAATGCACTGGATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGTAAACTGCTGGCAGACGCGGGTATCCAACTGACGTTTGCCGATGTCAATCAGGTGGTACTTGATGCCCT  >  CP009273/3767398‑3767902                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    tGCCCGTCTGGTGATTGGTATTGCTGCCCGTAACAACGAGCACATTCAGGTTATCACCAGCCTGACCAATGCACTGGATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCACCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGACTTTGCACGTTCTTGTAGGCCgaac                                                                                                                                                                                                                                         >  2:211635/1‑271 (MQ=255)                      tgctgcCCGTAACAACGAGCACATTCAGGTTATCACCAGCCTGACCAATGCACTGGATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCACCCCCTCTCCACCTGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTCTCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTTTCGGCCGGATCAGGCGCtttntgcccacccc                                                                                                                                                                                                                    >  2:60017/1‑262 (MQ=255)                        ctgcCCGTAACAACGAGCACATTCAGGTTATCACCAGCCTGACCCATGCACCGGATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCCGGTCGTAAGTAATCCACTCCCACCCTCTCCACATGGAGAAGGTGTGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAACTTGACCGTTCTAGTAGTCCGGATAAGGCGCTTCATNCGCCTCCGgc                                                                                                                                                                                                                  >  2:73497/1‑274 (MQ=255)                            ccGTAACAACGAGCACATTCAGGTTATCACCAGCCTGACCAATGCACTGGATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCttc                                                                                                                                                                                                             >  1:49299/1‑273 (MQ=255)                                   aggtacagcttttaGGTTATAACCAGACTGACCAATGCACTGGATGATGAGTCCGGCATCGAGCGTCTGGCACAAACCACCAGCGTGGATGAAGGGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCtctc                                                                                                                                                                                                      <  1:146097/262‑1 (MQ=39)                                                   ttATCAGCAGCCTGACCAATGCACTGGATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATTGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGCATTTGCACGTTCTTGTAGGACGGATAATGGGCTTACGCCGAATCAGGCGCCNCACCTCTCCacactacaagtgtt                                                                                                                                                                                       >  2:437223/1‑264 (MQ=255)                                                        aCCAGCCTGACCAATGCACTGGAGGATGAGTCCGGCATCGAGCGTCGGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTg                                                                                                                                                                                 <  1:60018/275‑1 (MQ=255)                                                          cAGCCTGACCAATGCACTGGATGATGATTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGCTGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTggtgga                                                                                                                                                                                >  1:430129/1‑270 (MQ=255)                                                                            ggATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCa                                                                                                                                                              <  1:211637/274‑1 (MQ=255)                                                                                           cATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCGGGAACTGCTGGCATGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTaaa                                                                                                                                               <  1:73498/274‑1 (MQ=255)                                                                                                                    aGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTACAAACATTGATGAAGGTTAATACTATGa                                                                                                                     <  1:437230/275‑1 (MQ=255)                                                                                                                                          tgctgGCAGGTCCTAAGTAATCCAATCCCACCCTCTCCACATGGGGAAGGTGGGTTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAgg                                                                                               <  1:321371/275‑1 (MQ=255)                                                                                                                                                                        cccTCTCCGCATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAgg                                                                                                                                                                              >  2:109747/1‑166 (MQ=255)                                                                                                                                                                            ctcCGCATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGaaa                                                                                                                                                                          <  1:109748/166‑1 (MQ=255)                                                                                                                                                                                   tGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTtgtaggcc                                                                                                                                                                                                                                             <  1:140454‑M2/92‑9 (MQ=255)                                                                                                                                                                                       gaAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGAt                                                                                                                                                                                                                                         <  2:140453/92‑1 (MQ=255)                                                                                                                                                                                         aGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGt                                                                                                                                >  2:61387/1‑195 (MQ=255)                                                                                                                                                                                             ggggTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAAt                                                                                                                            <  1:61388/195‑1 (MQ=255)                                                                                                                                                                                                       gCCTGATGCGCTACGCTTATCAGGCCTNCAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTCATACTATGAAAGCATTACATTTTGgcgc                                                                                                  <  1:526037/211‑1 (MQ=255)                                                                                                                                                                                                         cTGATTCGCTACACTTATCAGGCCTACAGGACGGATCACAATTTGTAGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCCATGCTCCTCTCCTCACGGAGAGGGTTGGGGTGAGGGAAAAGCCTCCCCCCAGCCCTCTCGGGTAAAAAACTTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGAATGAAATAACGGT‑‑AGAC‑TTATCGGAAAACTGCTGGCAACCGCGGGTAGCGACCACACGTTTGccta                             >  2:50315/1‑273 (MQ=255)                                                                                                                                                                                                          tGATGCGCTACGCTTATCAGGCCTACAGGATGCAGCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCACAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATANTATGAAAGNATTACAtttt                                                                                                       >  1:476673/1‑203 (MQ=255)                                                                                                                                                                                                              gcgcTACGCTTATCAGGACTACATGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACTCCGCAGCCTGCCCTGCCCCTCTCCTCACGGGGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGCACGTTAATCCTATGAAAGCATTACATTTTGgcg                                                                                                   <  2:476664/203‑1 (MQ=255)                                                                                                                                                                                                                            aGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCatc                                                                                                                                                                                                        >  2:716512/1‑88 (MQ=255)                                                                                                                                                                                                                                cTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTCCCCATctcct                                                                                                                                                                                                    <  1:716526/88‑1 (MQ=255)                                                                                                                                                                                                                                 tACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGcc                                                                                                                                                           >  1:41733/1‑128 (MQ=255)                                                                                                                                                                                                                                     ggATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCctct                                                                                                                                                       <  2:41732/128‑1 (MQ=255)                                                                                                                                                                                                                                        tGCATCACAATTTGTTGACTTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTACAAACATTGATGAAGGTTCATACTCTGAAAGCATTACATTTTGGCGCAGGTAATATCGCTCTTGCCTTTATAGGTAAACTGCTTGCAGAc                                                       >  2:632235/1‑221 (MQ=255)                                                                                                                                                                                                                                        tGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTg                                                                                                                                                                                                              >  2:624257/1‑70 (MQ=255)                                                                                                                                                                                                                                        tGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcc                                                                                                                                                                                                            >  2:74156/1‑72 (MQ=255)                                                                                                                                                                                                                                        tGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGTAAACTGCTGGCAGACGCGGGTATCCAACTGACGTTTGCCGATGTCAATCAGGTGGTACTTGATGCCCt  >  1:447774/1‑274 (MQ=255)                                                                                                                                                                                                                                           aTCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAgg                                                                                                                                 >  2:609589/1‑144 (MQ=255)                                                                                                                                                                                                                                            tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGcccc                                                                                                                                                                                                          <  1:624271/70‑1 (MQ=255)                                                                                                                                                                                                                                            tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCNCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGTAAACTGCTGGCAGACGCgg                                                   <  1:632249/221‑1 (MQ=255)                                                                                                                                                                                                                                            tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCctc                                                                                                                                                                                                        <  1:74157/72‑1 (MQ=255)                                                                                                                                                                                                                                            tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGTAAActgctg                                                             <  2:195415/211‑1 (MQ=255)                                                                                                                                                                                                                                            tCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGTAAActgctg                                                             >  1:195417/1‑211 (MQ=255)                                                                                                                                                                                                                                             cacaATTTGTTGAATTTGCACGTTCTtgtaggcctgataagcgtagcgcatcaggcaattaaccccac                                                                                                                                                                                                           <  2:634625‑M2/68‑43 (MQ=255)                                                                                                                                                                                                                                             cacaATTTGTTGAATTTGCACGTTCTtgtaggcctgataagcgtagcgc                                                                                                                                                                                                                              <  2:563769‑M2/49‑24 (MQ=255)                                                                                                                                                                                                                                               caATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTaa                                                                                                                             <  1:609602/144‑1 (MQ=255)                                                                                                                                                                                                                                                aaTTTGTTGAATTTGCACGTTCTtgtaggcctgataagcgtagcgcatcaggcaattaaccccac                                                                                                                                                                                                           <  1:97142‑M2/65‑43 (MQ=255)                                                                                                                                                                                                                                                 aTTTGTTGAATTTGCACGTTCTtgtaggcctgataagcgtagcgcatcaggcaattaaccccaccttc                                                                                                                                                                                                       >  1:634639‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                 aTTTGTTGAATTTGCACGTTCTtgtaggcctgataagcgtagcgcatca                                                                                                                                                                                                                          >  1:563781‑M2/1‑22 (MQ=255)                                                                                                                                                                                                                                                    tgttgAATTTGCACGTTCTtgtaggcctgataagtgtagcgcatcatgcaattaaccccaccttc                                                                                                                                                                                                       >  2:97141‑M2/1‑19 (MQ=255)                                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    TGCCCGTCTGGTGATTGGTATTGCTGCCCGTAACAACGAGCACATTCAGGTTATCACCAGCCTGACCAATGCACTGGATGATGAGTCCGTCATCGAGCGTCTGGCACACACCACCAGCGTGGATGAAGTGCTGGAACTGCTGGCAGGTCGTAAGTAATCCAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTGCCTGATGCGCTACGCTTATCAGGCCTACAGGATGCATCACAATTTGTTGAATTTGCACGTTCTTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCGCTGCCCCTCTCCTCACGGAGAGGGTTTGGGTGAGGGAAAAGCCTCACCCCAGCCCTCTCGGGTAAAAACATTGATGAAGGTTAATACTATGAAAGCATTACATTTTGGCGCAGGTAATATCGGTCGTGGCTTTATCGGTAAACTGCTGGCAGACGCGGGTATCCAACTGACGTTTGCCGATGTCAATCAGGTGGTACTTGATGCCCT  >  CP009273/3767398‑3767902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.