New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3949028 =	34 (0.850)	5 (0.130)	5/294	NT	10.4%	coding (338/1545 nt)	ilvA	L‑threonine dehydratase, biosynthetic; also known as threonine deaminase
	?	CP009273	3949257 =	54 (1.420)					coding (567/1545 nt)	ilvA	L‑threonine dehydratase, biosynthetic; also known as threonine deaminase

AAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGAT  >  CP009273/3949000‑3949518                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                      aaGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCCAAGTCGCCGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGACCTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCTGCGGCGGTCTGGCTGCtgg                                                                                                                                                                                                                                                      >  1:152746/1‑275 (MQ=255)                     aaCCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGACGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTAGACCGCGTATTTGTGCCCGTCGGCGGCGGCGGTCTGGCTGCGGGCGGGGCGGGGTTGATAAaac                                                                                                                                                                                                                                  >  1:646204/1‑275 (MQ=255)                      accgccaccgacGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGGATTTGTGCCAGTCGGCGGCGGAGGTCTGGCTGCTGGCGGGGCGGTGGTGAGCAaaca                                                                                                                                                                                                                                 >  1:722495/1‑275 (MQ=255)                           cacctccGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGNTCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCGGGCATGGCGGTGGTGATCAAACAACTGa                                                                                                                                                                                                                            <  1:502438/275‑1 (MQ=255)                                        gaaGTCGCCGAGGTTGGCGGCGCCGGCGGCGAAGGGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCC‑CCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCaaa                                                                                                                                                                                                              <  2:42031/274‑1 (MQ=255)                                               acgcggtcgagatgggcgtcctgctggagcagttccagcgccagcgtgccttgcccggcaatcaccatcggagggtcgaacggcggcacccaggtgaacccctgctgctgtgacagttcgatcgctttggctttcgcttcatcaaagttcgcnccgtggagcagcacttcgccgccgaagccgcgcaccgcctcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCCAATCAAagc                                                                                                                                                                                                            >  1:610506‑M2/212‑270 (MQ=255)                                               aCGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCACACAACTGATGCCGCAAATCACAGTGATc                                                                                                                                                                                                        >  1:191511/1‑275 (MQ=255)                                                      gcgcGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGCTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAg                                                                                                                                                                                                 <  1:395223/275‑1 (MQ=255)                                                               cggcggCGAAGTGCTGCTCCACGGGGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTNCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAg                                                                                                                                                                                        >  1:508083/1‑275 (MQ=255)                                                                                         gcaaggttGATGGAGCGAAAGCCAAAGCGCTCGACCGGTCACGGCAGCAGGGTTTCACCTGGGTGCCGCCGTTCGACCAGCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCGCCGGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCt                                                                                                                                                               <  2:508074/268‑1 (MQ=255)                                                                                                                  aGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGGTGATCTGc                                                                                                                                     >  1:264092/1‑275 (MQ=255)                                                                                                                         ggattGTCCCAGCAGCAGGGGTTAGCCTGGGGGCGGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCcgcgcg                                                                                                                               <  1:261044/270‑1 (MQ=255)                                                                                                                              gTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATg                                                                                                                                                                                                                          >  2:552632/1‑178 (MQ=255)                                                                                                                               gcncggcagccgGGGTGCCCCTGGGTGCCGCCGTTCTATCATCGGTGGGTGATTGCCGGGCAAGGCACGGTGGCGCTGGAACTGCTCCAGCGGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATAAAACAACTGATGCAGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCcgcgcg                                                                                                                               <  2:264088/263‑1 (MQ=255)                                                                                                                                gtcggcacccatgtgaacccctgcttctttgacagttcgatcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTa                                                                                                                       <  1:607500‑M2/145‑1 (MQ=255)                                                                                                                                  cagcagcagGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTTGCGGTGCTGATCAAACAACTGATGCCGc                                                                                                                                                                                                                      <  1:552643/178‑1 (MQ=255)                                                                                                                                        cagGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGTCGTGGCGGTGCTNATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTtgatga                                                                                                               >  1:630052/1‑275 (MQ=255)                                                                                                                                         agGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAATTCCAAGTGATCGCCGTAGAAGCGTAAGAATCCGCCTGCCCGAAAGACACGCTGGATGCGGGTCAACGGGTTGATCGCCCGCACGTAGGGCAGTTTGCCGac                                                                                                              >  2:338805/1‑274 (MQ=255)                                                                                                                                             gTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTcggcggcgg                                                                                                                                                                                                                                                                     >  2:189623/1‑120 (MQ=255)                                                                                                                                              gtgaCCGGGGTGGTGCCGGCCGACCCTCCGATGGGGATTGCCGGGAAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGCCGCCCATCGCGACCGCGTAGTTGTGCCAGTCGGCGGCGGCGGTCTGGCGGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCg                                                                                                          <  2:630038/271‑1 (MQ=255)                                                                                                                                                acccggggTGCCGCGGGTCGGCCCTCCGATGGGGTGTGCCGGGACAGTCACGCTGGCTCTGGAACTGTTTCAGCAGAGCGACCAGCTCGACAGAGTATTTGTGCCAGTCGTCGGCGGCGGTCTGGCTGCTGGAGTGGCGGTGGTGATCAAACAACTGAAGCCGCAAATCAAAGTGATCGCCGGAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATACGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAg                                                                                                       <  2:191509/270‑1 (MQ=255)                                                                                                                                                 aCCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGt                                                                                                                                                                                                                                                                 <  1:189625/120‑1 (MQ=255)                                                                                                                                                       gTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTg                                                                                                                                                                                                                                         >  1:439414/1‑138 (MQ=255)                                                                                                                                                       gTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGAGCGTAGGGCTATTTGCTGAAGGCGTAACGGTaaa                                                                                                >  1:425558/1‑275 (MQ=255)                                                                                                                                                           cgccgTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCa                                                                                                                                                                                                                                     <  2:439407/138‑1 (MQ=255)                                                                                                                                                           cgccgTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGGGCGTAgg                                                                                                                           >  2:230136/1‑244 (MQ=255)                                                                                                                                                             ccgTTCGACCATCCGATGGTGATTGCCGGGCAAGTCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCgg                                                                                                                                                                                                                                              >  1:471956/1‑127 (MQ=255)                                                                                                                                                              gacagttcgatcgctttggctttcgcttcatcaaagttcgcgccgtggagcagcacttcgccgccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATc                                                                                         <  1:178726‑M2/175‑1 (MQ=255)                                                                                                                                                               gTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTa                                                                                                                       <  1:230138/244‑1 (MQ=255)                                                                                                                                                                 tCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCt                                                                                                                                                                                                                                          <  2:471948/127‑1 (MQ=255)                                                                                                                                                                        tCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGt                                                                                                                                                                                                   >  1:293465/1‑159 (MQ=255)                                                                                                                                                                        tCCGATGGGGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAGAGTGAGCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGaa                                                                                >  1:644697/1‑274 (MQ=255)                                                                                                                                                                        gccggtgtttagtGCGGGGCAAGGCACGATGGCGCTGGAACTGCTCCAGCAGGACGCCCAGCTCGACTGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTTAAAGTAGCGTTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTATGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGaa                                                                                <  1:24554/262‑1 (MQ=255)                                                                                                                                                                            aTGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGaa                                                                                                                                                                                               <  2:293460/159‑1 (MQ=255)                                                                                                                                                                               gTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGaa                                                                                                              >  2:564497/1‑237 (MQ=255)                                                                                                                                                                                  aTTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTCTTTGCTGCAGGCGTAGCGATAAAACGCATCGGTGAGGAAACCTTCCGtct                                                                     >  2:338472/1‑273 (MQ=255)                                                                                                                                                                                   ttGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCg                                                                                                          <  1:564509/237‑1 (MQ=255)                                                                                                                                                                                      ccGCGCAAGGCAAGCCGGCGCTGGACATGCTCCAGCAGGCCGCCCCTCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTATAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGc                                                                 <  2:644683/275‑1 (MQ=255)                                                                                                                                                                                                             gAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAACCAACTGATGCCGCAAATCa                                                                                                                                                                                                                >  1:81246/1‑109 (MQ=255)                                                                                                                                                                                                                 tGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGTTCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGt                                                                                                                                             >  1:689933/1‑172 (MQ=255)                                                                                                                                                                                                                 tGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATc                                                                                                                                                                                                        >  1:2176/1‑113 (MQ=255)                                                                                                                                                                                                                 ggCTCCAGCAGGACGTCCATCTCGACCGCGTATTTGTGCTAGTCGGCGGCGGCGGTCCGGCTGCTGTCGTGGCGGTGCTGATCAAACAACTGATGCCGCACATCAAAGt                                                                                                                                                                                                            <  2:81245/108‑1 (MQ=255)                                                                                                                                                                                                                     ccAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGTTCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGAt                                                                                                                                         <  2:689919/172‑1 (MQ=255)                                                                                                                                                                                                                     ccAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCg                                                                                                                                                                                                    <  2:2176/113‑1 (MQ=255)                                                                                                                                                                                                                            gACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCCACTCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAgcg                            >  1:329878/1‑274 (MQ=255)                                                                                                                                                                                                                             ccgaagccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCa                                                                                                                                                                                                                     >  1:139388‑M2/38‑88 (MQ=255)                                                                                                                                                                                                                             aCGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTAATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCCCGACGACATCATCACCGTCGATAgcga                           >  1:659201/1‑274 (MQ=255)                                                                                                                                                                                                                             aCGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGATGGATGCGGGTGATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGAACTAATCAACGTCGATAgcgat                          >  1:699567/1‑275 (MQ=255)                                                                                                                                                                                                                                 agccgcgcaccgcgtcgactttgatgtcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATc                                                                                                                                                                                                                 <  2:139387‑M2/55‑1 (MQ=255)                                                                                                                                                                                                                                          ccGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGcctgcctg                                                                                                                                                                          >  2:533242/1‑118 (MQ=255)                                                                                                                                                                                                                                          ccGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATc                                                                                                                                        >  1:63940/1‑152 (MQ=255)                                                                                                                                                                                                                                             cgTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCtggcgtgg                                                                                                                                                                                                                                                 >  1:636742/1‑44 (MQ=255)                                                                                                                                                                                                                                             cgTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAACGTGCTCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGAATCGGTGACGACACCTTCCGTTTATGCCCGGAGTATCTCGACGACCTCAACACCGTCCATAgccatgcaattgttgcagcg           >  2:639627/1‑264 (MQ=255)                                                                                                                                                                                                                                             cgTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATc                                                                                                                                        >  1:140793/1‑149 (MQ=255)                                                                                                                                                                                                                                             cgTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGCGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCGGGTTGATCTGCTGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATAGGTGACGaca                                                                               >  1:714637/1‑204 (MQ=255)                                                                                                                                                                                                                                              gTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAag                                                                                                                                                                      <  1:533251/118‑1 (MQ=255)                                                                                                                                                                                                                                              gTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGcc                                                                                                                                    <  2:63939/152‑1 (MQ=255)                                                                                                                                                                                                                                                 tttGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGt                                                                                                                                                                                                                                             <  2:636728/44‑1 (MQ=255)                                                                                                                                                                                                                                                 tttGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGcc                                                                                                                                    <  2:140792/149‑1 (MQ=255)                                                                                                                                                                                                                                                    gtgCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTc                                                                          >  2:138141/1‑204 (MQ=255)                                                                                                                                                                                                                                                     ggCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAAACACGGAGGCCGCAAATCAAGGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGGCATCCGGTTGATCTGCCGCGCGGAGGGCTATTGGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCTATGCGATCTGTGCGGCGATGAAGGAt  <  1:49400/274‑1 (MQ=255)                                                                                                                                                                                                                                                       ccAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGcctgcctg                                                                                                                                                                          >  1:333045/1‑105 (MQ=255)                                                                                                                                                                                                                                                        cAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGtt                                                                      <  1:138142/204‑1 (MQ=255)                                                                                                                                                                                                                                                           tcggcggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAag                                                                                                                                                                      <  2:333039‑M2/98‑1 (MQ=255)                                                                                                                                                                                                                                                                ggCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAagca                                                                                                                                                                    >  1:20716‑M2/3‑102 (MQ=255)                                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                                      AAGGCCCTGATCGTTATGCCAACCGCCACCGCCGACATCAAAGTCGACGCGGTGCGCGGCTTCGGCGGCGAAGTGCTGCTCCACGGCGCGAACTTTGATGAAGCGAAAGCCAAAGCGATCGAACTGTCACAGCAGCAGGGGTTCACCTGGGTGCCGCCGTTCGACCATCCGATGGTGATTGCCGGGCAAGGCACGCTGGCGCTGGAACTGCTCCAGCAGGACGCCCATCTCGACCGCGTATTTGTGCCAGTCGGCGGCGGCGGTCTGGCTGCTGGCGTGGCGGTGCTGATCAAACAACTGATGCCGCAAATCAAAGTGATCGCCGTAGAAGCGGAAGACTCCGCCTGCCTGAAAGCAGCGCTGGATGCGGGTCATCCGGTTGATCTGCCGCGCGTAGGGCTATTTGCTGAAGGCGTAGCGGTAAAACGCATCGGTGACGAAACCTTCCGTTTATGCCAGGAGTATCTCGACGACATCATCACCGTCGATAGCGATGCGATCTGTGCGGCGATGAAGGAT  >  CP009273/3949000‑3949518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.