New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4326002 =	21 (0.520)	4 (0.100)	3/298	NT	14.5%	coding (847/1338 nt)	adiC	arginine:agmatine antiporter
	?	CP009273	4326087 =	27 (0.700)					coding (762/1338 nt)	adiC	arginine:agmatine antiporter

GAAGATGGTCATCAAAATACCGACGATAATCAGCCCCGCCACTGGCGTACCCGCTTTATTTACACGGGCAAAAATCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATGCCGCCATATAGGTTTCACCACGGAACCAGAACCAGCCAAATACGGCAATCCCG  >  CP009273/4325838‑4326360                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                  gAAGATGGTCATCAAAATACCGACGATAATCAGCCCCGCCACTGGCGTACCCGCTTTATTTACACGGGCAAAAATCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCACCGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGCGTCACCCAACGCCATCCGTGCGGCATCCACGAAGGGCGAAGCAGAAACGCGAAGCGGGGCATCGGGGAGCATCcacagac                                                                                                                                                                                                                                                          >  2:202517/1‑272 (MQ=255)             aaacatcccGACAATAATCACCCCCGCCCCTGCCGTACCCGCTTTATTTACACGGGCAAAAATCGGTGAGAACAGCCCGTCAGCGGCAGCGGCTTTCTCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTACGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCTTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCggtggt                                                                                                                                                                                                                                                <  2:711541/266‑1 (MQ=255)               aaaTACCGACGATAACCAGCCCCGCCACTGGCGTACCCGCTTTATTTACACGGGCAAAAATCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGa                                                                                                                                                                                                                                             <  1:39785/274‑1 (MQ=255)                                       ccACTGTCGTACCCGCTTTATTTACACGCGCAAAAATCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATNACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGcaatc                                                                                                                                                                                                                    >  1:543486/1‑275 (MQ=255)                                                                   ggCAAAAATCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAAt                                                                                                                                                                                                                                                         >  1:96793/1‑210 (MQ=255)                                                                     cAAAAATCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCgg                                                                                                                                                                                                                                                    >  2:273186/1‑213 (MQ=255)                                                                         aaTCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCggtggt                                                                                                                                                                                                                                                <  1:273190/213‑1 (MQ=255)                                                                                                          tttCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAATCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAAtggtg                                                                                                                                                                                                  <  1:380708/226‑1 (MQ=255)                                                                                                          tttCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCTGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATa                                                                                                                                                                                            <  1:371785/232‑1 (MQ=255)                                                                                                              gCCTTTTGACCTGCCGCCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAAGGGCCCCGGCGGTGTCACCCAACGTCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGc                                                                                                                                             <  1:408351/275‑1 (MQ=255)                                                                                                                                        gccgccCAGTGAACCTACGCCACCCGCATCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTTCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAAGCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACcaca                                                                                                                   <  1:712729/275‑1 (MQ=255)                                                                                                                                                             aCCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCa                                                                                                                                                                                                                                                             >  2:241958/1‑116 (MQ=255)                                                                                                                                                                 gCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAAt                                                                                                                                                                                                                                                         <  1:241961/116‑1 (MQ=255)                                                                                                                                                                        CGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCCACGGACGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAAGGTACTTTGAATTTCaccc                                                                                   <  1:134381‑M1/275‑2 (MQ=255)                                                                                                                                                                            gAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTg                                                                                                                                                                                                                                                                                  <  1:408682/80‑1 (MQ=255)                                                                                                                                                                                     cgccattcggtgatgccgcacggatggcgttgggtgacaccgccggggccattgtttccttctgcgcagTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAAc                                                                                                                                                                                                                              >  1:58409‑M2/70‑123 (MQ=255)                                                                                                                                                                                       tGGCCCCGGCGGTGTCACCCAACGCCATTCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTACGTTTCGGGTTTTTCACCCNTCCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAg                                                                                                                  >  1:570370/1‑229 (MQ=255)                                                                                                                                                                                       tGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAAcggc                                                                                                                                                                                                                           >  2:255978/1‑124 (MQ=255)                                                                                                                                                                                       tGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAAcgg                                                                                                                                                                                                                            >  1:396183/1‑123 (MQ=255)                                                                                                                                                                                       tGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGc                                                                                                                                                      >  2:106444/1‑193 (MQ=255)                                                                                                                                                                                         attcggtgatgccgcacggatggcgttgggtgacaccgccggggccattgtttccttctgcgcagTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAAcggcg                                                                                                                                                                                                                          <  2:58408‑M2/58‑1 (MQ=255)                                                                                                                                                                                           cccGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACggcggc                                                                                                                                                                                                                        <  2:396176/123‑1 (MQ=255)                                                                                                                                                                                           cccGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGca                                                                                                                                                                                                                       <  1:255981/124‑1 (MQ=255)                                                                                                                                                                                           cccGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACg                                                                                                                                                  <  1:106445/193‑1 (MQ=255)                                                                                                                                                                                                 atgccgcacggatggcgttgggtgacaccgccggagccattgtttccttctgcgcagTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAAc                                                                                                                                                                                                                              >  1:475025‑M2/58‑111 (MQ=255)                                                                                                                                                                                                    gtCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTg                                                                                                                                                          >  1:15839/1‑176 (MQ=255)                                                                                                                                                                                                     cgcacggatggcgttgggtgacaccgccggggccattgtttccttctgcgcagTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAAcggcg                                                                                                                                                                                                                          <  2:475017‑M2/58‑1 (MQ=255)                                                                                                                                                                                                                  tCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGAACTTTGAATTGCACCGAAGGTGCCCAGGCCGCGGAAGGTCCCGGCCCCCAtatatgc                                          >  2:737309/1‑271 (MQ=255)                                                                                                                                                                                                                      tGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCgg                                                                                                                                                                                                                                                    >  2:627601/1‑68 (MQ=255)                                                                                                                                                                                                                      tGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTTGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATgc                                                      <  1:737323/258‑1 (MQ=255)                                                                                                                                                                                                                      tGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGAc                                                                                                                       >  2:660343/1‑193 (MQ=255)                                                                                                                                                                                                                          gCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCggtggt                                                                                                                                                                                                                                                <  1:627615/68‑1 (MQ=255)                                                                                                                                                                                                                          gCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACcaca                                                                                                                   <  1:660357/193‑1 (MQ=255)                                                                                                                                                                                                                                                  aCGCGCAGTGCGGCATTAGGGATCATCCCCATAAt                                                                                                                                                                                                                                                         >  2:671345/1‑35 (MQ=255)                                                                                                                                                                                                                                                      gcagTGCGGCATTAGGGATCATCCCCATAATcgcg                                                                                                                                                                                                                                                     <  1:671359‑M2/31‑1 (MQ=255)                                                                                                                                                                                                                                                          tGCGGCATTAGGGATCATCCCCAGAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGNATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATGCCGCCATATAGGTTTCACCACGGAACCAGAACCAGCCAAATACGGCAATCCcg  >  1:500564/1‑274 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                                                  GAAGATGGTCATCAAAATACCGACGATAATCAGCCCCGCCACTGGCGTACCCGCTTTATTTACACGGGCAAAAATCGGTGGGAACAGTCCGTCATCGGCAGCGGCTTTCGCCGTTTGACCCGCCAGCAACGTCCAGCCGCCCAGTGAACCTAAGCAACCCGCAGCTGCGCAGAAGGAAACAATGGCCCCGGCGGTGTCACCCAACGCCATCCGTGCGGCATCACCGAATGGCGAAGCAGAAACGCGCAGTGCGGCATTAGGGATCATCCCCATAATCGCGGTGGTAGAAAGTACATAGCAAACGGCGGCAATCAATACCCCACCAATGGTGGCGATAGGGACATTGCGTTTCGGGTTTTTCACCACACCTGCGGCAACGGAGGCACTTTCCACACCGATGAACGACCACAGCGTAACGTTAAGGGTACTTTGAATTGCACCGAAGGTGCCCAGGCCGCTGACGTTCCATGCCGCCATATAGGTTTCACCACGGAACCAGAACCAGCCAAATACGGCAATCCCG  >  CP009273/4325838‑4326360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.