New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 158043	45 (1.120)	4 (0.110)	3/294	NT	8.0%	coding (476/531 nt)	ligT	2'‑5' RNA ligase
	?	CP009273	= 158600	49 (1.290)					coding (9/2430 nt)	hrpB	putative ATP‑dependent helicase

AGAAAGCGCCTTCTCTTTCTCGGCGCTCACTTCGCCTAAAAATGCCAGAGTCAGATGCAAATTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGGCGGCGCGTAACGTCGCGCAACGGCTGGCGGAGCTGCTTAACGAAAAGCCAGGCGATACCGTTGGCTACCGGATGCGTGCGCAAAACTGCGTCGGGCCGAATAC  >  CP009273/158336‑158872                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                 aggcaGCGCCTTCTCTTTCTCTGCGCTCGCTTTGCCTAAAAATGCCAGAGTCAGATGCAAATTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTtg                                                                                                                                                                                                                                                                        <  1:56068/271‑1 (MQ=255)    aaGCGCCTTCTCTTTCTCGGCGCTCACTGCGCCTAAAAATGCCAGAGTCAGATGCAAATTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATCGCAAAGAACAGACGTTGCGGTTCAGACATGTGNGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTtgctg                                                                                                                                                                                                                                                                     >  1:551861/1‑275 (MQ=255)                  tctcGGCGTGCACTTCGCTGAAAAATGCCAGATTCAGATGCAAATTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTTTGGCNCGCCAATGGATAATCTGTTCGCGTATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGaa                                                                                                                                                                                                                                                       <  1:556691/275‑1 (MQ=255)                         gcTCACTTCGCCTAAAAATGCCAGAGTCAGATGCAAATTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAAttactta                                                                                                                                                                                                                                                <  1:442498/275‑1 (MQ=255)                                              cAGAGTCAGATGCGAATTATCTGCGGCTACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCACGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTTCCCGTTGCTTCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgccgc                                                                                                                                                                                                                           <  1:386397/275‑1 (MQ=255)                                                ggtgcaaatgagaaTTATCGGCGGCGACCGGACGTCCCGGCTCGGGTGGGAAGTGTGTGGCGGGGCAATGGATAATCTGTTCGCGGATTTGTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAg                                                                                                                                                                                                                         <  2:92535/263‑1 (MQ=255)                                                gaggaaGATGCAAATGAGCGGCGGCGACCGGACGGCCCGCTTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAg                                                                                                                                                                                                                         <  2:651411/270‑1 (MQ=255)                                                 agcttgATGCAAATTGTCGGAGTCTACCTGACGTCCCGCCTCTGGTGGGGAGTGTGTGGCGCGCCAATTGATAATCTGTTCNCGGATTTCNGCAGGTAAGTCGTTAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACATGAATTAGTTACCGCTCTCGATTGTGCGCCGCAg                                                                                                                                                                                                                         <  1:490911/269‑1 (MQ=255)                                                     aGATGCAAATTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCNCGCCAATGNATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTAGCCCGTTCCTGCCGTCTTACCTGAATTACTTAcc                                                                                                                                                                                                                                              <  1:494061/249‑1 (MQ=255)                                                            aaTTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgcc                                                                                                                                                                                                                             >  1:354054/1‑259 (MQ=255)                                                                                            ggTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGACGCTACAATGTGGCTCGAAGAATGTCGACCCTCTGGANCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTgc                                                                                                                                                                                                                                >  1:665250/1‑224 (MQ=255)                                                                                                       tgtgGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCACGTTTCTGCCGTCTTACCTCAATTACTTACCGCTCTCGATTGGTAGCTGCCGGTCTTCTTAAGTGAGCCGACAGGGGGCGGGGAATGCACATGGGTGCCggcgcca                                                                                                                                                                   >  2:685912/1‑268 (MQ=255)                                                                                                            cgcgcCAATGGATAATCTGTTCGCGGATTTCTGCAGGTCAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGCCGTCGTTGCCCGTTGCTGCCGTCTGACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGACTGCCGGTGCAAcggctg                                                                                                                                                             >  1:387312/1‑275 (MQ=255)                                                                                                                     ggttagtCTGTTCNGGTGTTTCGGTAGGTAAGTCGATAGCAAAGATCGGACGTTGCGGTTCAGTCATGTTAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATTTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATcc                                                                                                                                                     <  2:551850/268‑1 (MQ=255)                                                                                                                           tCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTgcgc                                                                                                                                                                                                         >  1:657198/1‑216 (MQ=255)                                                                                                                               ttCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGAc                                                                                                                                                                                                     <  2:657184/216‑1 (MQ=255)                                                                                                                                tCGCGGATTTCTGCAGGTAAGCCGGTAGCCAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATNGTgcg                                                                                                                                                                                                                               >  1:502737/1‑189 (MQ=255)                                                                                                                                gctcggagtgcggCAGGGAGGTCGATAGCAAAGGGCAGACGTTGCTGGTAAGACTTTGGCGGCACTCGGTGATGACTTACTGTGAGTGTATATTGTGGGTCGCAGAACGTCTACCCTCTGGAGTGTTTTGTGTCGTCCTTGCACGTTGCTGCCGTCTTACCTGAAGTACTTACCACTCTCGATTGTGCGCCGCAGGTGTTATTAAGAGCGACGACCGGTGCCGAGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACgg                                                                                                                                         <  2:94656/263‑1 (MQ=255)                                                                                                                                    ggATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgccgc                                                                                                                                                                                                                           <  2:502728/189‑1 (MQ=255)                                                                                                                                                gTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTgcg                                                                                                                                                                                                                               >  1:341959/1‑173 (MQ=255)                                                                                                                                                    gTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgccgc                                                                                                                                                                                                                           <  2:341953/173‑1 (MQ=255)                                                                                                                                                               aGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGttgcccgtggacgcacacgctacacgccgctaaaacgctgggcgctaacgcaataacaaggattgtcgcaatggaattttctccccctctacagcgcgcgacgctaattcagcgttacaaacgttttttcgccgatgtgatcccacccgatggtctcgaatacacgc                                                                                                           <  2:641264‑M2/274‑168 (MQ=255)                                                                                                                                                               aGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGttgcccgtggacgcacacgctacacgccgctaaaacgctgggcgctaacgcaataacaaggattgtcgcaatggaattttctccccctctacagcgcgcgacgctaattcagcgttacaaacgtttgttagccgatgtgatcaccaccgatggtcgcgaattaatgct                                                                                                          <  2:328043‑M2/275‑169 (MQ=255)                                                                                                                                                                gAACAGACGTTGCGGTTCAGACATGTGAGGTACTCGGTTATGAATTACCGCGATGCTACATTGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTgg                                                                                                         <  1:173289/275‑1 (MQ=255)                                                                                                                                                                    aGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGttgcccgtggacgcacacgctacacgccgctaaaacgctgggcgctaacgcaataacaaggattgtcgcaatggaattttctccccctctacagcgcgcgacgctaattcagcgttacaaacgttttttagccgatgtgatcacacccgatggtcgcgaattaacgctacact                                                                                                     >  1:328049‑M2/1‑102 (MQ=255)                                                                                                                                                                      aCGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGCGCGTTTTGTGTCGTCGTTGCCCGtt                                                                                                                                                                                                                                                                         >  2:342832/1‑109 (MQ=255)                                                                                                                                                                      aCGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTgcg                                                                                                                                                                                                                               >  2:337530/1‑151 (MQ=255)                                                                                                                                                                      aCGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGgcggcg                                                                                                    >  1:147452/1‑274 (MQ=255)                                                                                                                                                                          tGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTtgctg                                                                                                                                                                                                                                                                     <  1:342838/109‑1 (MQ=255)                                                                                                                                                                          tGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgccgc                                                                                                                                                                                                                           <  1:337536/151‑1 (MQ=255)                                                                                                                                                                           gCGGTTCAGACATGTGAGGCACTGGGTTGTGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGANATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGGCGGCGCGt                                                                                                 >  1:505435/1‑272 (MQ=255)                                                                                                                                                                                         tgAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGATCGGTTTGTGTCGTCGTTGCCCGTTGCTGACGTc                                                                                                                                                                                                                                                                >  2:397898/1‑99 (MQ=255)                                                                                                                                                                                         tgAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCg                                                                                                                                                                                                                                                                  >  1:48477/1‑97 (MQ=255)                                                                                                                                                                                             gCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCtt                                                                                                                                                                                                                                                              <  2:48476/97‑1 (MQ=255)                                                                                                                                                                                             gCACTCGGTTATGAAGTACCGCGATGCTACAATGTGGCGCTAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTAc                                                                                                                                                                                                                                                            <  1:397905/99‑1 (MQ=255)                                                                                                                                                                                                cTCGGTTATGAATTACCGCGAGGCGACATGGTGGCGCGAAGAATGTCAACCCTCTGGAGCGTTTCGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGCAttact                                                                                                                                                                                                                                                  >  1:505703/1‑106 (MQ=255)                                                                                                                                                                                                      tATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCt                                                                                                                                                                                                                                                          >  2:290237/1‑92 (MQ=255)                                                                                                                                                                                                        tGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGttgcccgtggacgcacacgctacacgccgctaaaacgctgggcgctaacgcaataacaaggactgtcgcaatggaattttctccccctctacagcgcgcgacgctaattcagcgttacaaacgttttttagccgatgtgatcacacccgatggtcgcgaattaacgctacactgcccgaatacgggtgcgatgaccggttgtgcaacgc                                                                 >  1:641278‑M2/1‑66 (MQ=255)                                                                                                                                                                                                          aaTTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAAt                                                                                                                                                                                                                                                      <  1:290242/92‑1 (MQ=255)                                                                                                                                                                                                                             tgtgGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTgc                                                                                                                                                                                                                                >  1:71043/1‑95 (MQ=255)                                                                                                                                                                                                                               tgGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAAtta                                                                                                                                                                                                                                                    >  1:223323/1‑73 (MQ=255)                                                                                                                                                                                                                               tgGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTACTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTAGAGCCGCGTCGTCTGGCGGCGCGTAACGTCGCGCAACGGATGGCGGAGCGGCTTAACGAAAAGACAGCGAATACAGTTg                                          >  1:713998/1‑275 (MQ=255)                                                                                                                                                                                                                                 gcgcGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTtgctg                                                                                                                                                                                                                                                                     >  2:705243/1‑54 (MQ=255)                                                                                                                                                                                                                                 gcgcGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgccg                                                                                                                                                                                                                            <  2:71042/95‑1 (MQ=255)                                                                                                                                                                                                                                 gcgcGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGATGCAACTGCTGgcgc                                                                                                                                                         >  1:654865/1‑162 (MQ=255)                                                                                                                                                                                                                                   gcgAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAAttactta                                                                                                                                                                                                                                                <  2:223321/73‑1 (MQ=255)                                                                                                                                                                                                                                     gaagaaTGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGt                                                                                                                                                                                                                                                                 <  1:705257/54‑1 (MQ=255)                                                                                                                                                                                                                                     gaagaaTGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATcc                                                                                                                                                     <  2:654851/162‑1 (MQ=255)                                                                                                                                                                                                                                                aCCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgcc                                                                                                                                                                                                                             >  2:604500/1‑79 (MQ=255)                                                                                                                                                                                                                                                   ctctGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGGCGGCGCGGACCGTCGCGCAACGGCAGGCGGAGCGGCGTAACGAAAAGCCAGGGGACACCCTGGGCTGCCCGGTGCGGGCCCa                       >  2:573971/1‑274 (MQ=255)                                                                                                                                                                                                                                                   ctctGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGGCGGAGCGTAACGTCGCGCAACGGCTGGCGGAGCTGCTTAACGAAAAGACAGGCGATACCGTTAGCTACCGGAGGCGGGCGCaa                      >  1:713976/1‑275 (MQ=255)                                                                                                                                                                                                                                                    tctGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAg                                                                                                                                                                                                                         <  1:604513/79‑1 (MQ=255)                                                                                                                                                                                                                                                     ctGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTgg                                                                                                                                                                               >  2:88075/1‑120 (MQ=255)                                                                                                                                                                                                                                                         aGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGc                                                                                                                                                                           <  1:88076/120‑1 (MQ=255)                                                                                                                                                                                                                                                            gTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGTCGGCGCGTAACGTCGCGCAACGGCTGGCGGAGCTGCTGAAc                                                                >  2:739384/1‑224 (MQ=255)                                                                                                                                                                                                                                                             ttttGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGcgcc                                                                                                                                                                                                                             >  2:152314/1‑66 (MQ=255)                                                                                                                                                                                                                                                                tgtgTCGTCGTTGCCCGTTGCTGCCGTCGTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCTGACAGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGGCGGCGCGTAACGTCGCGCAACGGCTGGCGGAGCTTCTTAACGaaa                                                            <  1:739398/224‑1 (MQ=255)                                                                                                                                                                                                                                                                 gtgtCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAg                                                                                                                                                                                                                         <  1:152315/66‑1 (MQ=255)                                                                                                                                                                                                                                                                        cgtTGCACGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGGCGGCGCGTAACGTCGCGCAACGGCTGGCGGAGCTGCTTAACGAAAAGCCAGGCGATACCGTTGGCTACCGGATGCGTGCGCAAAACTGCGTCGGGCCGAATAc  <  1:126376/274‑1 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                 AGAAAGCGCCTTCTCTTTCTCGGCGCTCACTTCGCCTAAAAATGCCAGAGTCAGATGCAAATTATCGGCGGCGACCGGACGTCCCGCCTCAGGTGGGAAGTGTGTGGCGCGCCAATGGATAATCTGTTCGCGGATTTCTGCAGGTAAGTCGATAGCAAAGAACAGACGTTGCGGTTCAGACATGTGAGGCACTCGGTTATGAATTACCGCGATGCTACAATGTGGCGCGAAGAATGTTAACCCTCTGGAGCGTTTTGTGTCGTCGTTGCCCGTTGCTGCCGTCTTACCTGAATTACTTACCGCTCTCGATTGTGCGCCGCAGGTATTATTAAGTGCGCCGACCGGGGCCGGGAAATCAACCTGGCTGCCGCTGCAACTGCTGGCGCATCCCGGCATTAACGGGAAAATTATCCTGCTGGAGCCGCGTCGTCTGGCGGCGCGTAACGTCGCGCAACGGCTGGCGGAGCTGCTTAACGAAAAGCCAGGCGATACCGTTGGCTACCGGATGCGTGCGCAAAACTGCGTCGGGCCGAATAC  >  CP009273/158336‑158872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.