Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC CP009273 4,175,921 Δ18 bp 100% coding (644‑661/4224 nt) rpoC → RNA polymerase, beta prime subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP009273 4175921 4175938 18 47 [0] [0] 49 rpoC RNA polymerase, beta prime subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 41759200 (0.000)44 (1.170) 34/290 NT 100% coding (643/4224 nt) rpoC RNA polymerase, beta prime subunit
?CP009273 4175939 = 0 (0.000)coding (662/4224 nt) rpoC RNA polymerase, beta prime subunit

CCTATGTGGTTATCGAAGGCGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTGCCGGTACTGCCGCCAGATCTGCGTCCGCTGGTTCCGCTGGATGGTGGTCGTTTCGCGACTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCT  >  CP009273/4175705‑4176194
                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  
ccTATGTGGTTATCGAAGGCGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAAGCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc                                                                                                                                                                                                                         >  1:707091‑M1/1‑216 (MQ=255)
           aTCGAAGGCGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaacagagtggatgatcctgaccgttctgccggt                                                                                                                                                                                                              >  1:442697‑M1/1‑205 (MQ=255)
            tCGAAGGCGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGTTGGGGGCGGAAGCAATCCAGCCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTACGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCAAAAACACGCGTAtcaaaatgctggaagctttc                                                                                                                                                                                                                                                                >  2:660037‑M1/1‑204 (MQ=255)
                aGGCGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTAGGTGTCGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttc                                                                                                                                                                                                                                                            <  1:660051‑M1/224‑25 (MQ=255)
                   cGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccaga                                                                                                                                                                                                                                         >  2:600464‑M1/1‑197 (MQ=255)
                   cGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttaagtctggtaacaaaccaga                                                                                                                                                                                                                                         <  1:600477‑M1/240‑44 (MQ=255)
                      tATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGTACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTCtcaaactgctggaagcgttcgttcagtctg                                                                                                                                                                                                                                                      >  1:261463‑M1/1‑194 (MQ=255)
                                         cagcagATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctgga                                                                                                                                                                                                                                                                       >  1:63652‑M1/1‑175 (MQ=255)
                                             agATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcg                                                                                                                                                                                                                                                                   <  2:63651‑M1/188‑18 (MQ=255)
                                                                             cTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttca                                                                                                                                                                                                                                                           >  1:32510‑M1/1‑139 (MQ=255)
                                                                                gAAGAGTTCGGTGACGAATTCGACGCGAAGAGGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAANCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacg                                                                                                                                          <  1:672180‑M1/274‑139 (MQ=255)
                                                                                 aaGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtct                                                                                                                                                                                                                                                       <  2:32509‑M1/164‑30 (MQ=255)
                                                                                      ttCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgta                                                                                                                                   >  1:15285‑M1/1‑130 (MQ=255)
                                                                                        cGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGTTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctnaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtat                                                                                                                                  >  1:543265‑M1/1‑128 (MQ=255)
                                                                                          gTGACGAATTCGACGCGAAGATGGGGGCGGAGGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttcagctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgt                                                                                                                               >  1:143982‑M1/1‑126 (MQ=255)
                                                                                          gTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCGTGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgt                                                                                                                               >  1:294738‑M1/1‑126 (MQ=255)
                                                                                                                        aaGCTATTCCGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCANGCGTAtcaaactgctggacgcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctagacgatctttatcgtcgcgtcattaaccgtaacaaccgtctgaa                                                                                                  <  1:546188‑M1/274‑179 (MQ=255)
                                                                                                                              tCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaacaagagtggatgatcctgcccgttctgccgntactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaaagatcagtatcgtcgcgtacttacccgtaacaaccgtctgaaccgtctg                                                                                           >  1:684828‑M1/1‑90 (MQ=255)
                                                                                                                                            aaGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttc                                                                                                                                                     >  1:14224‑M1/1‑76 (MQ=255)
                                                                                                                                                gCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggcagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgac                                                                                                                                                 <  2:14224‑M1/203‑132 (MQ=255)
                                                                                                                                                 cATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaacgtctgctggatctggctgcgccg                                                                         >  1:596537‑M1/1‑71 (MQ=255)
                                                                                                                                                 cATGGATCTGGAGCAACAGTGCGAACAGATGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcattctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggncgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaa                                                                                                              >  1:529689‑M1/1‑71 (MQ=255)
                                                                                                                                                  tgggatCCGGGGCAAGAGGGCGACCAGCGGCGGGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggaggatcctgaccgtgctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaacgtctgctggatctggctgcgccgg                                                                        <  2:294733‑M1/272‑205 (MQ=255)
                                                                                                                                                      aTCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtc                                                                                                                         >  2:741684‑M1/1‑66 (MQ=255)
                                                                                                                                                          ggAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcatta                                                                                                                     <  1:741698‑M1/221‑160 (MQ=255)
                                                                                                                                                               aaGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtca                                                                                                                                                                                                                                                                                 <  2:15447‑M1/60‑4 (MQ=255)
                                                                                                                                                                agagTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaacgtctgctggacctggctgcgccggacatcctctttcgt                                                          >  2:673545‑M1/1‑56 (MQ=255)
                                                                                                                                                                agagTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaa                                                                                                                                            >  1:17420‑M1/1‑56 (MQ=255)
                                                                                                                                                                    tGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgat                                                                                                                                        <  2:17420‑M1/192‑141 (MQ=255)
                                                                                                                                                                      cGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTCtcaaactgctggaagcgttcgttcagtctgctaacaaaccagagtggatgatcctgaccgttctgccggtactgccgcccgatctgcgcccgctggttccgctggttggtggtcgtttggcgacttctgcc                                                                                                                                                 >  2:420161‑M1/1‑50 (MQ=255)
                                                                                                                                                                      cGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacacaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggatccgcaggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgacacgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaa                                                   >  1:641415‑M1/1‑50 (MQ=255)
                                                                                                                                                                        aaCAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttca                                                                                                                                                                                                                                                           >  1:70173‑M1/1‑48 (MQ=255)
                                                                                                                                                                          cAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctga                                                                                                                                             <  1:420168‑M1/181‑136 (MQ=255)
                                                                                                                                                                            gCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtct                                                                                                                                                                                                                                                       <  2:70172‑M1/73‑30 (MQ=255)
                                                                                                                                                                              tGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgac                                                                                                                                                 >  2:40058‑M1/1‑42 (MQ=255)
                                                                                                                                                                                cGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatc                                                                                                                                 >  1:372248‑M1/1‑40 (MQ=255)
                                                                                                                                                                                  tGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagctctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaacgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgaatgctgc                                       >  1:131698‑M1/1‑38 (MQ=255)
                                                                                                                                                                                  tGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctga                                                                                                                                             <  1:40059‑M1/173‑136 (MQ=255)
                                                                                                                                                                                  tGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgac                                                                                                                                                 >  2:521288‑M1/1‑38 (MQ=255)
                                                                                                                                                                                    aaGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcg                                                                                                                             <  2:372241‑M1/187‑152 (MQ=255)
                                                                                                                                                                                      gagCTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggtcggtggtcgtttcgcgacttctgacctga                                                                                                                                             <  1:521297‑M1/169‑136 (MQ=255)
                                                                                                                                                                                         cTGAACGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtctttaaccgtaacaaccgtctgaaacgtctgctggatctgactgcgccggacatcatcgtacgtaacgaaaaacgaaagcagcaggaag                                 >  1:314191‑M1/1‑31 (MQ=255)
                                                                                                                                                                                         cTGAACGAAACCAAATCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaac                                                                                                                                                                                                                                             >  1:553433‑M1/1‑31 (MQ=255)
                                                                                                                                                                                            aaCGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatcngcgtccgctgggtccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaacgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcaggaag                                 <  1:673559‑M1/271‑244 (MQ=255)
                                                                                                                                                                                             aCGAAACCAACTCCGAAACCAAGCGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccaga                                                                                                                                                                                                                                         <  2:553422‑M1/70‑44 (MQ=255)
                                                                                                                                                                                                                    cGTAtcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgncgcgtcattaaccgtaacaaccgtctgaaacgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcaggaagcggtagacgccctgctggataacggtcg     >  1:619668‑M1/1‑4 (MQ=255)
                                                                                                                                                                                                                       atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgaccgttctgccggtactgccgccagatctgcgtcngctggttccgctggatggtggtcgtttcgcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaacgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcaggaagccgtagcagacctgctggataacggtcgtcg  <  1:510926‑M1/275‑275 (MQ=255)
                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                                                  
CCTATGTGGTTATCGAAGGCGGTATGACCAACCTGGAACGTCAGCAGATCCTGACTGAAGAGCAGTATCTGGACGCGCTGGAAGAGTTCGGTGACGAATTCGACGCGAAGATGGGGGCGGAAGCAATCCAGGCTCTGCTGAAGAGCATGGATCTGGAGCAAGAGTGCGAACAGCTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGACCAAGCGTATCAAACTGCTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTTCTGCCGGTACTGCCGCCAGATCTGCGTCCGCTGGTTCCGCTGGATGGTGGTCGTTTCGCGACTTCTGACCTGAACGATCTGTATCGTCGCGTCATTAACCGTAACAACCGTCTGAAACGTCTGCTGGATCTGGCTGCGCCGGACATCATCGTACGTAACGAAAAACGTATGCTGCAGGAAGCGGTAGACGCCCT  >  CP009273/4175705‑4176194

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: