| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP009273 | 2,809,385 | Δ148 bp | 100% | coding (267‑414/1557 nt) | gshA ← | glutamate‑cysteine ligase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2809385 | 2809532 | 148 | 25 [0] | [0] 25 | gshA | glutamate‑cysteine ligase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2809384 | 0 (0.000) | 21 (0.840) | 21/206 | NT | 100% | coding (415/1557 nt) | gshA | glutamate‑cysteine ligase |
| ? | CP009273 | 2809533 = | 0 (0.000) | coding (266/1557 nt) | gshA | glutamate‑cysteine ligase | |||||
GCAGGTAATACATACCGCACTCGGTTTTCTCAAACGGCAGCGACGTTGGTTTTCCTTGCAGGAAAGAAGAACAAATCGCCGGAGATGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAGCGATTTTTCAGCCCTTCACGATACAGCGTTTTAAAGCGTCCGGTGTTAGAAGTGCCGTACTGTGCCAGTTCGATGTCCTGACCTTCTGCGATGTAGCATGGCATACTTAACGGCCACATCCGCTCATCGCCCATATTGCGCGCCGTATAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATT > CP009273/2809114‑2809599 | tcaggtactcanaaccgcacgcgggttgCTCAAACGGCAGCGACGTTGGTTTTCCTTGCAGGAAAGAAGAACAAATCGCCGGAGATGCACCAAACAGATAAAGAATGACCCAACCGAAACGATAGTAAGTGCGGAGAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaac < 2:70893‑M1/262‑5 (MQ=255) cACTCGGTTTTCTCAAACGGCAGCGACGTTGGTTTTCCTTGCAGGAAAGAAGAACAAATCGCCGGAGCTGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTTCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATAAGCGCCCGAGATATCACCGCACTTCGTTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgaaaa > 1:383894‑M1/1‑254 (MQ=255) aGCGACGTTGGTTTTCCTTGCAGGAAAGAAGAACAAATCGCCGGAGATGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaata > 1:27255‑M1/1‑233 (MQ=255) tgttccTTGAGGGTAAGAAGAACAATACGCCGGAGAAGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccac < 2:27255‑M1/273‑54 (MQ=255) ccTTGCAGGAAAGAAGAACAAATCGCCGGAGATGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacaatgcagatcgcgcataaaggtcagcataggttcaatataantatccaatggg > 2:61509‑M1/1‑218 (MQ=255) gCAGGAAAGAAGAACAAATCGCCGGAGATGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatcca < 1:61509‑M1/266‑53 (MQ=255) tCGCCGGAGATGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTTGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgctt > 1:282361‑M1/1‑196 (MQ=255) aTAAGGAATGACCCAACCGAAACGATAGGAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcngatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttccgcaaaatcggtagtaatcaa > 1:521084‑M1/1‑174 (MQ=255) tctTTGGCATGAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttc > 1:650925‑M1/1‑107 (MQ=255) tGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttccgca < 2:650914‑M1/187‑85 (MQ=255) atatCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtaagcatatgttcaat > 2:11253‑M1/1‑86 (MQ=255) atCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatat > 2:443514‑M1/1‑84 (MQ=255) cACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtaagcatatgttcaatatca < 1:11253‑M1/127‑46 (MQ=255) ccGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcacc < 1:443520‑M1/127‑48 (MQ=255) cACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatccccatccactggtgtaatgaattccagcaatgcttccgcaaaatcggtagtaatccatttgtgcgtcagtgcggaacctaatgcttcaggatgacctgttgttgccagtgtgccatcagcattaacacgcaaagtttcgcgctccagcc > 1:65956‑M1/1‑77 (MQ=255) cctgttattnacagaaggcctttGGCAAAGAGAAATTGTATTGAACGCCGGAAATGGTTGGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatacactggtgtaatgaattccagaaatgcttccgcaaaatcggtagtaatacatttgtgcgtcagtgcggaacctaatgcttcatgatgacctgttgttgccagtgtgccatcagcattaacacgcaaagtttcgcgctccagcccacg < 2:65956‑M1/262‑198 (MQ=255) aCTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggt > 2:156144‑M1/1‑76 (MQ=255) cGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagc < 1:156147‑M1/102‑31 (MQ=255) tGCCATTGTAAAAAAGAAATTGTAGGGCACCCCCGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcaggtcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttccgcaaaatcggtagtaatccatttgtgcgtcagtgcggaacctaatgcttcaggatgacctgttgttgccagtgtgccatcagcattaacacgcaaagtttcgcgctccagcccacgctgtatcccctttaacgc < 2:282356‑M1/275‑216 (MQ=255) ttGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttca > 1:587403‑M1/1‑55 (MQ=255) cAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatat < 2:587392‑M1/94‑44 (MQ=255) ttGCATCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttccgcaaaatcggtagtaatccatttgtgcgtcagtgcggaa > 1:583541‑M1/1‑18 (MQ=255) aTCAGCGCGCCGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttccgcaaaatcggtagtaatccatttgtgcgtcagtgcggaaccta < 2:583530‑M1/138‑125 (MQ=255) ccGTAtaacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttccgcaaaatcggtagtaatccatttgtgcgtcagtgcggaacctaatgctt > 2:455275‑M1/1‑5 (MQ=255) ataacgatgcagatcgcgcataaaggtcagcatatgttcaatatcaccatccactggtgtaatgaattccagcaatgcttccgcaaaatcggtagtaatccatttgtgcgtcagtgcggaacctaatgcttcagg < 1:455281‑M1/135‑135 (MQ=255) | GCAGGTAATACATACCGCACTCGGTTTTCTCAAACGGCAGCGACGTTGGTTTTCCTTGCAGGAAAGAAGAACAAATCGCCGGAGATGCACCAAACAGATAAGGAATGACCCAACCGAAACGATAGTAATTGCGGATAACGCGGAAATAGCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAGCGATTTTTCAGCCCTTCACGATACAGCGTTTTAAAGCGTCCGGTGTTAGAAGTGCCGTACTGTGCCAGTTCGATGTCCTGACCTTCTGCGATGTAGCATGGCATACTTAACGGCCACATCCGCTCATCGCCCATATTGCGCGCCGTATAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATT > CP009273/2809114‑2809599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |