| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | CP009273 | 2,809,385 | Δ148 bp | 100% | coding (267‑414/1557 nt) | gshA ← | glutamate‑cysteine ligase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2809385 | 2809532 | 148 | 25 [0] | [0] 25 | gshA | glutamate‑cysteine ligase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2809384 | 0 (0.000) | 21 (0.840) | 21/206 | NT | 100% | coding (415/1557 nt) | gshA | glutamate‑cysteine ligase |
| ? | CP009273 | 2809533 = | 0 (0.000) | coding (266/1557 nt) | gshA | glutamate‑cysteine ligase | |||||
GCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAGCGATTTTTCAGCCCTTCACGATACAGCGTTTTAAAGCGTCCGGTGTTAGAAGTGCCGTACTGTGCCAGTTCGATGTCCTGACCTTCTGCGATGTAGCATGGCATACTTAACGGCCACATCCGCTCATCGCCCATATTGCGCGCCGTATAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGAACCTAATGCTTCAGGATGACCTGTTGTTGCCAGTGTGCCATCAGCATTAACACGCAAAGTTTCGCGCTCCAGCCCACGCTGTATCCCCTTTAACGC > CP009273/2809262‑2809747 | tcaggtactcanaaccgcacgcgggttgctcaaacggcagcgacgttggttttccttgcaggaaagaagaacaaatcgccggagatgcaccaaacagataaagaatgacccaaccgaaacgatagtaagtgcggagaacgcggaaatagcccgcagaaattttctctttggcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAAc < 2:70893‑M2/4‑1 (MQ=255) cactcggttttctcaaacggcagcgacgttggttttccttgcaggaaagaagaacaaatcgccggagctgcaccaaacagataaggaatgacccaaccgaaacgatagtaatttcggataacgcggaaatagcccgcagaaattttctctttggcataagcgcccgagatatcaccgcacttcgtttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCagatcgcgaaaa > 1:383894‑M2/255‑271 (MQ=255) agcgacgttggttttccttgcaggaaagaagaacaaatcgccggagatgcaccaaacagataaggaatgacccaaccgaaacgatagtaattgcggataacgcggaaatagcccgcagaaattttctctttggcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAata > 1:27255‑M2/234‑275 (MQ=255) tgttccttgagggtaagaagaacaatacgccggagaagcaccaaacagataaggaatgacccaaccgaaacgatagtaattgcggataacgcggaaatagcccgcagaaattttctctttggcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCAc < 2:27255‑M2/53‑1 (MQ=255) ccttgcaggaaagaagaacaaatcgccggagatgcaccaaacagataaggaatgacccaaccgaaacgatagtaattgcggataacgcggaaatagcccgcagaaattttctctttggcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACAATGCAGATCGCGCATAAAGGTCAGCATAGGTTCAATATAANTATCCAAtggg > 2:61509‑M2/219‑274 (MQ=255) gcaggaaagaagaacaaatcgccggagatgcaccaaacagataaggaatgacccaaccgaaacgatagtaattgcggataacgcggaaatagcccgcagaaattttctctttggcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCa < 1:61509‑M2/52‑1 (MQ=255) tcgccggagatgcaccaaacagataaggaatgacccaaccgaaacgatagtaattgcggataacgcggaaatagcccgcagaaattttctcttttgcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCtt > 1:282361‑M2/197‑275 (MQ=255) ataaggaatgacccaaccgaaacgataggaattgcggataacgcggaaatagcccgcagaaattttctctttggcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCNGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAatcaa > 1:521084‑M2/175‑273 (MQ=255) tctttggcatgagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTc > 1:650925‑M2/108‑187 (MQ=255) tggcatcagcgcccgagatatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCa < 2:650914‑M2/84‑1 (MQ=255) atatcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTAAGCATATGTTCAat > 2:11253‑M2/87‑127 (MQ=255) atcaccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAatat > 2:443514‑M2/85‑127 (MQ=255) caccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTAAGCATATGTTCAATATCa < 1:11253‑M2/45‑1 (MQ=255) ccgcacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCAcc < 1:443520‑M2/47‑1 (MQ=255) cacttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCCCCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGAACCTAATGCTTCAGGATGACCTGTTGTTGCCAGTGTGCCATCAGCATTAACACGCAAAGTTTCGCGCTCCAGcc > 1:65956‑M2/78‑270 (MQ=255) cctgttattnacagaaggcctttggcaaagagaaattgtattgaacgccggaaatggttggcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATACACTGGTGTAATGAATTCCAGAAATGCTTCCGCAAAATCGGTAGTAATACATTTGTGCGTCAGTGCGGAACCTAATGCTTCATGATGACCTGTTGTTGCCAGTGTGCCATCAGCATTAACACGCAAAGTTTCGCGCTCCAGCCCACg < 2:65956‑M2/197‑1 (MQ=255) acttcgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGt > 2:156144‑M2/77‑102 (MQ=255) cgcttgccagaatgccattggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGc < 1:156147‑M2/30‑1 (MQ=255) tgccattgtaaaaaagaaattgtagggcacccccgaaatggtttgcatcagcgcgccgtaTAACGATGCAGGTCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGAACCTAATGCTTCAGGATGACCTGTTGTTGCCAGTGTGCCATCAGCATTAACACGCAAAGTTTCGCGCTCCAGCCCACGCTGTATCCCCTTTAACGc < 2:282356‑M2/215‑1 (MQ=255) ttggcaaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCa > 1:587403‑M2/56‑94 (MQ=255) caaagagaaattgtagtgcacgccggaaatggtttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAatat < 2:587392‑M2/43‑1 (MQ=255) ttgcatcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGaa > 1:583541‑M2/19‑138 (MQ=255) atcagcgcgccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGAACCTa < 2:583530‑M2/124‑1 (MQ=255) ccgtaTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGAACCTAATGCtt > 2:455275‑M2/6‑135 (MQ=255) aTAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGAACCTAATGCTTCAgg < 1:455281‑M2/134‑1 (MQ=255) | GCCCGCAGAAATTTTCTCTTTGGCATCAGCGCCCGAGATATCACCGCACTTCGCTTGCCAGAATGCCATTGGCAAAGAGAAATTGTAGTGCACGCCGGAAATGGTTTGCATCAGCGCGCCGTAGCGATTTTTCAGCCCTTCACGATACAGCGTTTTAAAGCGTCCGGTGTTAGAAGTGCCGTACTGTGCCAGTTCGATGTCCTGACCTTCTGCGATGTAGCATGGCATACTTAACGGCCACATCCGCTCATCGCCCATATTGCGCGCCGTATAACGATGCAGATCGCGCATAAAGGTCAGCATATGTTCAATATCACCATCCACTGGTGTAATGAATTCCAGCAATGCTTCCGCAAAATCGGTAGTAATCCATTTGTGCGTCAGTGCGGAACCTAATGCTTCAGGATGACCTGTTGTTGCCAGTGTGCCATCAGCATTAACACGCAAAGTTTCGCGCTCCAGCCCACGCTGTATCCCCTTTAACGC > CP009273/2809262‑2809747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |