New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	562233 =	NA (NA)	17 (0.910)	16/260	NT	63.0%	intergenic (+1/‑65)	renD/insE1	pseudogene, DLP12 prophage;Phage or Prophage Related/IS3 transposase A
	?	CP009273	813695 =	10 (0.530)					coding (185/513 nt)	moaB	inactive molybdopterin adenylyltransferase

CATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/562424‑562233 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGTT  >  CP009273/813695‑813827                                                                                                                                                                                                                                                                                                                                       CATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTA                                                                                             >  1:99854/1‑234     CAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGG                                                                                         <  2:99850/234‑1                                              CAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGTGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCAGGTGAGTCACCTCTGAGTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTTGACCGTGAAGTTGAAGGTTTTGGTGAA       <  1:234678/275‑1                                                         AGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCAAGCGACGATGTACAAGT                                                                                                        >  2:386951/1‑167                                                             CTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTA                                                                                                    <  1:386957/167‑1                                                                                    TGCTGTTTACGGGGTATTTTACTGCTTGAGACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGAT                                                                                                                >  1:279072/1‑132                                                                                        GTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTAC                                                                                                            <  2:279067/132‑1                                                                                                                        TTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTG                                              >  1:185810/1‑162                                                                                                                            TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGC                                          <  2:185805/162‑1                                                                                                                                                  AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCC                                                                                                                         >  1:305896/1‑61                                                                                                                                                   GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGAC                                                                                                                   >  1:40026/1‑66                                                                                                                                                      TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCG                                                                                                                     <  2:305890/61‑1                                                                                                                                                       TTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATG                                                                                                               <  2:40025/66‑1                                                                                                                                                              CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAG      >  1:150256/1‑164                                                                                                                                                                  GCCGCGTGTCCACTATTGCTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGTT  <  2:150251/164‑1                                                                                                                                                                                    CTGGGTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTA                                                                                             >  2:312857/1‑55                                                                                                                                                                                        GTAAGATCACTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGG                                                                                         <  1:312863/55‑1                                                                                                                                                                                                                                                                                                                                       CATACAGGCTGAGTTCACGGGCTGCGGCAGTAACACCGATGCGTTCAGCAAGCTTCAGGGCTTCACTGCGAAATTCAGGCGAATGCTGTTTACGGGGTTTTTTACTGGTTGATACTGTTTTTGTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/562424‑562233 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGTT  >  CP009273/813695‑813827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.