New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	562233 =	NA (NA)	17 (0.910)	16/260	NT	63.0%	intergenic (+1/‑65)	renD/insE1	pseudogene, DLP12 prophage;Phage or Prophage Related/IS3 transposase A
	?	CP009273	813695 =	10 (0.530)					coding (185/513 nt)	moaB	inactive molybdopterin adenylyltransferase

CAAAACAACACCGGTATTACGCAAAACTTATCGTACATTGGCGGCTAAAACGTCAAAAGGAGAGATCAGATGAGTCAGGTAAGCACTGAATTTATCCCGACCCGTATTGCTATTCTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGTTCCGGATGTTGTCGTTTGAAGAGATTGGCACTTCCACGTTGCAATCTCGTGCGGTAGCGGGCGTCGCCAACAAAACGCTGATTTTCGCCATGCCGGGTTCGACCAAAGCGTGCCGTACCGCATGGGAAAATATCATCGCG  >  CP009273/813442‑813966                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                aaaaaCAACTCTGTTATTAAGCAAATCTTATCGAAAATTGGCGGCTAAAACGTAAAAAGGGGAGAGCAGATGAGTCATGTAAGCACTGAATTTATCCCGAACCGTATTGCTATTCTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGcga                                                                                                                                                                                                                                                               <  1:193535/271‑1 (MQ=255)                         aaCTTATCGTACATTGGCGGCTAAAACGTCAAAAGGAAGGATCAGAGGAGTCAGGTAAGCACTGAATTTATCCCGACCCGTATTGCTATTCNTACGGTTTCTAATCGTCGCTGTGAAGACGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCAACGATGTACAAGTGGTATTGATTACggg                                                                                                                                                                                                                                    <  1:313137/275‑1 (MQ=255)                                                     tCAAAAGGAGAGATCAGATGAGTCAGGGAAGCACTGAATTTATCCCGACCCGTATTGCTATTCTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTAtt                                                                                                                                                                                                                                             >  1:241506/1‑238 (MQ=255)                                                              catacaggctgagttcacgggctgcggcagtaacaccgatgcgttcagcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTa                                                                                                                                                                                                                                        >  1:99854‑M2/193‑234 (MQ=255)                                                                  caggctgagttcacgggctgcggcagtaacaccgatgcgttcagcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACggg                                                                                                                                                                                                                                    <  2:99850‑M2/46‑1 (MQ=255)                                                                                                   gACCCGTATTGCTATTCTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGa                                                                                                                                                                                                                      >  1:278785/1‑215 (MQ=255)                                                                                                       cGTATTGCTATTCTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGa                                                                                                                                                                                                                  <  2:278780/215‑1 (MQ=255)                                                                                                           cagcaagcttcagggcttcactgcgaaattcaggtgaatgctgtttacggggttttttactggttgatactgtttttgtcaggtgagtcacctctgagtgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTTGACCGTGAAGTTGAAGGTTTTGGTGaa                                                                                                                                                  <  1:234678‑M2/128‑1 (MQ=255)                                                                                                               tATTCTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCa                                                                                                                                                                                                                                                                   >  2:308153/1‑158 (MQ=255)                                                                                                                   cTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGcga                                                                                                                                                                                                                                                               <  1:308159/158‑1 (MQ=255)                                                                                                                      agggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCAAGCGACGATGTACAAGt                                                                                                                                                                                                                                                   >  2:386951‑M2/137‑167 (MQ=255)                                                                                                                          cttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTa                                                                                                                                                                                                                                               <  1:386957‑M2/35‑1 (MQ=255)                                                                                                                                                 tgctgtttacggggtattttactgcttgagactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGAt                                                                                                                                                                                                                                                           >  1:279072‑M2/110‑132 (MQ=255)                                                                                                                                                     gtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTAc                                                                                                                                                                                                                                                       <  2:279067‑M2/27‑1 (MQ=255)                                                                                                                                                                         cgcgATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTccc                                                                                                                                                                                                  >  1:154811/1‑165 (MQ=255)                                                                                                                                                                             aTTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAg                                                                                                                                                                                              <  2:154806/165‑1 (MQ=255)                                                                                                                                                                              ttCGGGGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGTTCCGGATGTTGTCGTTTGAAGAGATTGGCACTTCCACGTTGCAATCTCGTGCGGTAGCGGGc                                                                                <  1:193763/274‑1 (MQ=255)                                                                                                                                                                                     tttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATtg                                                                                                                                                                                         >  1:185810‑M2/74‑162 (MQ=255)                                                                                                                                                                                         tcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATtgctgc                                                                                                                                                                                     <  2:185805‑M2/93‑1 (MQ=255)                                                                                                                                                                                                               agagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGcc                                                                                                                                                                                                                                                                    >  1:305896‑M2/48‑61 (MQ=255)                                                                                                                                                                                                                gagtttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGcgac                                                                                                                                                                                                                                                              >  1:40026‑M2/47‑66 (MQ=255)                                                                                                                                                                                                                   tttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGcg                                                                                                                                                                                                                                                                <  2:305890‑M2/18‑1 (MQ=255)                                                                                                                                                                                                                    ttactcacttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATg                                                                                                                                                                                                                                                          <  2:40025‑M2/24‑1 (MQ=255)                                                                                                                                                                                                                           cttagccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAg                                                                                                                                                 >  1:150256‑M2/36‑164 (MQ=255)                                                                                                                                                                                                                               gccgcgtgtccactattgctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGtt                                                                                                                                             <  2:150251‑M2/133‑1 (MQ=255)                                                                                                                                                                                                                                                 ctgggtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTa                                                                                                                                                                                                                                        >  2:312857‑M2/14‑55 (MQ=255)                                                                                                                                                                                                                                                     gtaagatcaCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACggg                                                                                                                                                                                                                                    <  1:312863‑M2/46‑1 (MQ=255)                                                                                                                                                                                                                                                         ggTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTa                                                                                                                                                                                                                                        >  2:222628/1‑47 (MQ=255)                                                                                                                                                                                                                                                            aTCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTAACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGTTCGGGATGTTGTCGTTTGAAGAGATTGGCACTTCCACGTTGCATTCTCGTGAGGTAGCGGGCGTCGCCAACAAAACGCTGATTTTCGCCATGCCGGGTTGAACCAAAGCGTACCGGAACGCATAGAaaaaaagaaacgcg  >  1:217596/1‑264 (MQ=255)                                                                                                                                                                                                                                                             tCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACggg                                                                                                                                                                                                                                    <  1:222633/47‑1 (MQ=255)                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                CAAAACAACACCGGTATTACGCAAAACTTATCGTACATTGGCGGCTAAAACGTCAAAAGGAGAGATCAGATGAGTCAGGTAAGCACTGAATTTATCCCGACCCGTATTGCTATTCTTACGGTTTCTAATCGTCGCGGTGAAGAAGACGATACCTCCGGTCACTATCTGCGCGATTCGGCGCAAGAAGCGGGCCATCACGTTGTCGATAAAGCCATTGTGAAAGAAAACCGCTACGCTATTCGCGCTCAGGTATCTGCGTGGATCGCCAGCGACGATGTACAAGTGGTATTGATTACGGGTGGTACTGGCCTGACGGAAGGTGATCAGGCTCCCGAAGCATTGCTGCCGTTGTTCGACCGTGAAGTTGAAGGTTTTGGTGAAGTGTTCCGGATGTTGTCGTTTGAAGAGATTGGCACTTCCACGTTGCAATCTCGTGCGGTAGCGGGCGTCGCCAACAAAACGCTGATTTTCGCCATGCCGGGTTCGACCAAAGCGTGCCGTACCGCATGGGAAAATATCATCGCG  >  CP009273/813442‑813966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.