Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	579529	579571	43	2 [1]	[1] 2	appY	global transcriptional activator; DLP12 prophage

ATCCTTACTTGCCATGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACTAACA  >  CP009273/579478‑579532                                                   |     atCCTTACTTGCCATGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACt      >  1:126225/1‑51 (MQ=255)     ttACTTGCCATGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACTAACa  <  2:126221/51‑1 (MQ=255)                                                   |     ATCCTTACTTGCCATGTTCAAAAAACGCGAAAGTGTAAATTCATTTATACTAACA  >  CP009273/579478‑579532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑