Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP009273	578843	578881	39	2 [1]	[1] 2	tfaX/appY	pseudogene, DLP12 prophage;Phage or Prophage Related/global transcriptional activator; DLP12 prophage

CAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAA  >  CP009273/578878‑578920     |                                       cAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTtaat      >  1:253855/1‑39 (MQ=255)     agGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATaaaa  <  2:253850/39‑1 (MQ=255)     |                                       CAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAA  >  CP009273/578878‑578920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑