| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4034057 | 28 (0.290) | 17 (0.010) +G |
10/232 | 5.1 | 18.1% | intergenic (+61/+209) | rrfA/mobB | 5S ribosomal RNA of rrnA operon/molybdopterin‑guanine dinucleotide biosynthesis protein B |
| ? | KX077536 | 8 = | 127 (0.040) | intergenic (–/‑1091) | –/unknown | –/BLA | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGGCCTTTCGTTTTATCTGTTGTTTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4034028‑4034057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGAT > KX077536/8‑139 | GGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGG > 1:394282/1‑75GGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGA > 1:1856684/1‑69GGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGA > 1:290926/1‑69GGGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGA > 1:2117461/1‑45 GGCCTTTCGTTTTATCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAA > 1:3564250/1‑139 TTACCTGTTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACCAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAA < 1:4180526/139‑1 TTGTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCACCGCCCTAGACCTAGGGc > 1:1271718/1‑57 TTGTATGTCGGGGAGCGCTCGCCTGGGCGGGACAAATCCGCGGCCATAGACCTAGGGATATATTCCGCTTCCTCGCACACTGACACGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGGAATGGGTTACGGACGGGGCG > 1:3921963/1‑139 TGTTTGTCGGGGAACGCTCTCCTGAGTAGGAAAAATCCGCCGCCCTAGCCCTAGG > 1:1367143/1‑55 GTTTGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGG > 1:1925136/1‑54 TGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGCCTGCGGCGAGCGGAAAGGGCTTACGAACGGGGCGGAGAT > 1:3796597/1‑139 TGTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCACCCTAGACCTAGGGATATATTCCGCGTCCTCGCGCACTGACTCGCTACGCGCGGGCGTTCGACTGCGGAGAGCGGAAATGGCTTACGAACGGGGCGGAGA < 1:1106777/138‑1 TGTCGGCGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGG > 1:3987368/1‑51 TGTCGGAGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTG > 1:3031868/1‑77 GTCGGGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGA > 1:4213258/1‑44 GGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGA < 1:4095175/133‑1 GGGAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGA > 1:2941152/1‑40 | GGGCCTTTCGTTTTATCTGTTGTTTGTCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4034028‑4034057‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAACGCTCTCCTGAGTAGGACAAATCCGCCGCCCTAGACCTAGGGATATATTCCGCTTCCTCGCTCACTGACTCGCTACGCTCGGTCGTTCGACTGCGGCGAGCGGAAATGGCTTACGAACGGGGCGGAGAT > KX077536/8‑139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |