BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	3576788 =	NA (NA)	93 (1.330)	50/230	0.2	88.6%	intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA
*	?	CP009273	= 4232212	12 (0.170)	93 (1.330)	50/230	0.2	88.6%	intergenic (‑30/+342)	xylE/malG	D‑xylose transporter/maltose transporter subunit

Only 100 of 190 total aligned reads displayed.

ACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATAAAAACAATACTATTGCCGTGA  >  CP009273/4232074‑4232349

   tctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTAt                                                                                                                                        <  1:4284981‑M2/12‑1 (MQ=255)

       aggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTa                                                                                                                                         >  1:3501120‑M2/124‑134 (MQ=255)

       aggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGt                                                                                                                                    >  1:1495376‑M2/124‑139 (MQ=255)

        gTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGGAATCGAAAATATATAACTGGAAATAAACTGGGAATTCATTCAGACCTGCCCTAGAACATTCTGATCTTTg                                                                                                                                          <  1:964824‑M2/132‑2 (MQ=255)

           agcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAt                                                                                                                                >  1:1284789‑M2/120‑139 (MQ=255)

              gcctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAtt                                                                                                                               <  1:2816418‑M2/21‑1 (MQ=255)

              gAAATAACGGCGGGGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATTGAAAATATATAACTTGAATTATAATGGGGATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccc                                                                                                                              <  1:4228926‑M2/138‑14 (MQ=255)

              acctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAt                                                                                                                                <  1:3456101‑M2/20‑1 (MQ=255)

              acctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCAt                                                                                                                                <  1:521868‑M2/20‑1 (MQ=255)

                ctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATg                                                                                                                           <  1:3654087‑M2/25‑1 (MQ=255)

                aaTAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaact                                                                                                                           >  1:1820457‑M2/1‑123 (MQ=255)

                aaTAACGGCGGTGTCGTAGCCAAATAATAAACCACCCAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTtgtgatgttgccaact                                                                                                                           <  1:4194260‑M2/139‑17 (MQ=255)

                  tAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaactta                                                                                                                         >  1:2770937‑M2/1‑121 (MQ=255)

                  ggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGACCTTTTATCAGTGCAt                                                                                                                                <  1:3025419‑M2/20‑1 (MQ=255)

                      cggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGaa                                                                                                                     <  1:3801757‑M2/31‑1 (MQ=255)

                        gctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAAtt                                                                                                                   >  1:1631118‑M2/107‑139 (MQ=255)

                         ctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTg                                                                                                                  >  1:2608046‑M2/106‑139 (MQ=255)

                          gtgtCGTAGCCCAATAATAAACCACCTAATGTAACGACTAAGGTAAACGAAAAAATATAACTGGAATTATACCTGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgtagctgccaacataatgattta                                                                                                                 <  1:3047094‑M2/139‑27 (MQ=255)

                            ggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGa                                                                                                                      >  1:853342‑M2/103‑132 (MQ=255)

                             gacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAg                                                                                                              >  1:899303‑M2/102‑139 (MQ=255)

                              acggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAg                                                                                                              <  1:1989675‑M2/38‑1 (MQ=255)

                                     aaaTAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatgg                                                                                                      >  1:1087569‑M2/1‑102 (MQ=255)

                                     aaaTAATAAACCACCTAATGAAGCGACTAAGGTAATCGAAAATACATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagggtatgatgg                                                                                                      <  1:3606986‑M2/139‑38 (MQ=255)

                                       ataataAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggggatgctgccaacttactgatttagtgtatgatggtg                                                                                                    <  1:791559‑M2/139‑40 (MQ=255)

                                             gttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa                                                                                              <  1:435378‑M2/54‑1 (MQ=255)

                                               ccaccTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag                                                                                            >  1:2634962‑M2/1‑92 (MQ=255)

                                               ccaccTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag                                                                                            >  1:2024482‑M2/1‑92 (MQ=255)

                                                ctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaactctatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTgg                                                                                                                       <  1:2497786‑M2/29‑1 (MQ=255)

                                                caccTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg                                                                                           >  1:1914169‑M2/1‑91 (MQ=255)

                                                  ccTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                                                          <  1:2545958‑M2/138‑50 (MQ=255)

                                                  ccTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgattta                                                                                                                 >  1:1681622‑M2/1‑89 (MQ=255)

                                                       tcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGc                                                                                                   >  1:1878631‑M2/76‑124 (MQ=255)

                                                          gtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAgg                                                                                                             >  1:324937‑M2/73‑111 (MQ=255)

                                                          aGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                                                                  >  1:2963696‑M2/1‑81 (MQ=255)

                                                          aGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                                                                  >  1:3346510‑M2/1‑81 (MQ=255)

                                                           tggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACaa                                                                                 <  1:3071297‑M2/67‑1 (MQ=255)

                                                            cGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg                                                                                 <  1:2165467‑M2/137‑59 (MQ=255)

                                                                   ggTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtt                                                                        <  1:2997607‑M2/139‑68 (MQ=255)

                                                                               tatataACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt                                                            >  1:1012853‑M2/1‑60 (MQ=255)

                                                                               atcgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCttt                                                             >  1:1326125‑M2/52‑138 (MQ=255)

                                                                                 cgggcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCt                                                          <  1:2442220‑M2/90‑1 (MQ=255)

                                                                                    gcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGt                                                                      <  1:4255784‑M2/78‑1 (MQ=255)

                                                                                    gcattatctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCtgt                                                        <  1:3647283‑M2/92‑1 (MQ=255)

                                                                                          aaTTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc                                                      >  1:3213109‑M2/1‑49 (MQ=255)

                                                                                          aaTTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaactta                                                                                                                         >  1:3104229‑M2/1‑49 (MQ=255)

                                                                                          aaTTATACCGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatt                                                                                                                   >  1:229830‑M2/1‑49 (MQ=255)

                                                                                           ctgaacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAttt                                                                                        <  1:1343930‑M2/60‑1 (MQ=255)

                                                                                           aTTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttca                                                <  1:3715962‑M2/139‑92 (MQ=255)

                                                                                              aacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTg                                                                                                                              >  1:1384294‑M2/37‑58 (MQ=255)

                                                                                              aacataaaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCtttt                                                            >  1:2086110‑M2/37‑124 (MQ=255)

                                                                                               taCTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaa                                                                                                                             >  1:3009684‑M2/1‑44 (MQ=255)

                                                                                                cataaagcactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa                                                                                              <  1:3553011‑M2/54‑1 (MQ=255)

                                                                                                  tGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg                                         >  1:1054041‑M2/1‑41 (MQ=255)

                                                                                                    ggTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgac                                       <  1:259510‑M2/139‑101 (MQ=255)

                                                                                                    ggTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagct                                             <  1:4053276‑M2/133‑95 (MQ=255)

                                                                                                    ggTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt                                                            >  1:798336‑M2/1‑39 (MQ=255)

                                                                                                    aaacactatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATaa                                       <  1:206714‑M2/109‑1 (MQ=255)

                                                                                                      tATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgg                                     <  1:506520‑M2/139‑103 (MQ=255)

                                                                                                         tcattcaGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggt                                  <  1:2349462‑M2/139‑106 (MQ=255)

                                                                                                         tcattcaGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggt                                  <  1:814151‑M2/139‑106 (MQ=255)

                                                                                                          tatcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATcc                                 >  1:195867‑M2/25‑139 (MQ=255)

                                                                                                          tatcaataagttggagtcattaccCTGATCTTTTATAAGTGCATTGATGGTGGAAGTGTCAGGCAGAGAAGGCAATTATCATTTTTTACAATGCGTATACGTAATg                                                                  >  1:1654370‑M2/25‑106 (MQ=255)

                                                                                                           atcaataagttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCa                                >  1:1055641‑M2/24‑139 (MQ=255)

                                                                                                            ttcaGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctat                                                                   >  1:1152075‑M2/1‑31 (MQ=255)

                                                                                                            ttcaGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttct                                                                     >  1:2282849‑M2/1‑31 (MQ=255)

                                                                                                              caGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt                                                  <  1:2970458‑M2/118‑90 (MQ=255)

                                                                                                              caGACCTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc                                                                               <  1:331350‑M2/89‑61 (MQ=255)

                                                                                                                  ccTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgtcggggtggtgcgta                          >  1:4334980‑M2/1‑25 (MQ=255)

                                                                                                                  ccTGCCTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgta                          >  1:2203701‑M2/1‑25 (MQ=255)

                                                                                                                   gttggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATg                                                                               <  1:558036‑M2/69‑1 (MQ=255)

                                                                                                                     tggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGAt                        <  1:3726681‑M2/124‑1 (MQ=255)

                                                                                                                     tggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGAt                        <  1:2525175‑M2/124‑1 (MQ=255)

                                                                                                                      ggagtcattaccCTGATCTTTTTTCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAAtt                                              >  1:487640‑M2/13‑114 (MQ=255)

                                                                                                                      ggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCtttt                                                            >  1:3875285‑M2/13‑100 (MQ=255)

                                                                                                                      ggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATaaa                     >  1:1555917‑M2/13‑139 (MQ=255)

                                                                                                                      ggagtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATaaa                     <  1:681090‑M2/127‑1 (MQ=255)

                                                                                                                      ccTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggc                     <  1:1157273‑M2/139‑119 (MQ=255)

                                                                                                                      ccTTAGACCATTCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccc                                                         <  1:3323641‑M2/103‑83 (MQ=255)

                                                                                                                      ccTTAGACCATTCTGATCTTTggtgatgctgccaacttactgattta                                                                                                                 >  1:2038590‑M2/1‑21 (MQ=255)

                                                                                                                        agtcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATaaaa                    >  1:3548670‑M2/11‑138 (MQ=255)

                                                                                                                          tcattaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATAAAAAc                  <  1:2669705‑M2/130‑1 (MQ=255)

                                                                                                                            attaccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATAAAAACAAt               >  1:352384‑M2/7‑139 (MQ=255)

                                                                                                                            attaccCTGATCTTTTATCAGGGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATAAAAACAAt               >  1:3771179‑M2/7‑139 (MQ=255)

                                                                                                                             ttaccCTGATCTTTTATCAGGGCATTGATGGTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTGACAATGCGTTTACGTa                                                                     >  1:2730562‑M2/6‑84 (MQ=255)

                                                                                                                                ttCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccg           >  1:2679114‑M2/1‑11 (MQ=255)

                                                                                                                                ttCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc            <  1:1028093‑M2/138‑128 (MQ=255)

                                                                                                                                ttCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc            <  1:2867376‑M2/138‑128 (MQ=255)

                                                                                                                                ttCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc            <  1:497224‑M2/138‑128 (MQ=255)

                                                                                                                                ttCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcacc            <  1:2160089‑M2/138‑128 (MQ=255)

                                                                                                                                ttCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt                                                                             >  1:4193447‑M2/1‑11 (MQ=255)

                                                                                                                                ttCTGATCTTTggtgatgctgccaacttactgatttagtgtatgatg                                                                                                       <  1:4208343‑M2/47‑37 (MQ=255)

                                                                                                                                ccCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACa                                                                                  <  1:1257409‑M2/66‑1 (MQ=255)

                                                                                                                                     aTCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATAAAAACAATACTATTGcc      <  1:1600480/139‑1 (MQ=255)

                                                                                                                                       cTTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggaca    >  1:3147654‑M2/1‑4 (MQ=255)

                                                                                                                                       cTTTTATCAGTTCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATaa                                       <  1:1311114/104‑1 (MQ=255)

                                                                                                                                       cTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAgg                                                                                                    <  1:1118733/43‑1 (MQ=255)

                                                                                                                                       cTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa                                                                                              <  1:1815547/49‑1 (MQ=255)

                                                                                                                                       cTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTa                                                                                              <  1:3851321/49‑1 (MQ=255)

                                                                                                                                       cTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTGCTGTGATCTTAATTGTGATAATTATCCAAAATTGATAAAAACAATACTa           <  1:3326777/132‑1 (MQ=255)

                                                                                                                                          tggtgatgctgcccacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttgtgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagccccgccggccatc  >  1:3837516‑M2/1‑1 (MQ=255)

ACTCAACAGTACCGGAAATAACGGCGGTGTCGTAGCCAAATAATAAACCACCTAATGTAGCGACTAAGGTAATCGAAAATATATAACTGGAATTATACTGGGTATTCATTCAGACCTGCCTTAGACCATTCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAATGCGTTTACGTAATGTCTTTTCTGTGATCTTAATTGTGATAATTATCCAAAATTGATAAAAACAATACTATTGCCGTGA  >  CP009273/4232074‑4232349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.