| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3576788 = | NA (NA) | 70 (1.390) | 42/234 | 0.1 | 88.6% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | CP009273 | = 4232212 | 9 (0.180) | intergenic (‑30/+342) | xylE/malG | D‑xylose transporter/maltose transporter subunit | |||||
ATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576923‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTTGGCTACGACACCGCCGTTATTTCCGGTACTGTTGAG < CP009273/4232212‑4232075 ATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAA > 1:1504395/1‑139ATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAA > 1:166505/1‑139 GGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAG > 1:2840451/1‑139 CGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGA < 1:2526094/138‑1 CGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGA < 1:1417593/138‑1 GGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAA < 1:1867376/138‑1 GGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAA < 1:1591029/138‑1 GGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAA < 1:1238225/138‑1 TTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTC < 1:1813867/138‑1 TTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAA < 1:317356/131‑1 GCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGG < 1:1574981/139‑1 GCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGG < 1:978970/139‑1 CGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGC < 1:1697397/138‑1 CGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGC < 1:1504759/138‑1 ACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTC < 1:1300325/139‑1 GCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGG > 1:1741698/1‑131 CACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATG > 1:2321570/1‑139 CGTCAGTAGCTGAACAGGTGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATA > 1:999743/1‑138 CGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGA > 1:2564610/1‑111 GTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACC < 1:897900/139‑1 GCTGAGCAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGGATA > 1:284587/1‑139 GAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAACGATCAGAATGGACTAAGGCAGGGCTGAATGAATACCCAGTGTAAT > 1:2572718/1‑138 ACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATCCACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGTATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTC < 1:332040/138‑1 GGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGT > 1:170232/1‑139 GAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTT > 1:1709851/1‑139 AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTA > 1:1822410/1‑139 GACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGAT < 1:1598061/86‑1 ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGA > 1:62750/1‑139 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATT > 1:1170003/1‑139 AGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTC > 1:173547/1‑86 acaAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACC < 1:2423254/136‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGA < 1:11990/77‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGAT < 1:2342542/73‑1 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAG > 1:1637948/1‑138 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTC < 1:213490/139‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATCCCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCG < 1:1708958/137‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCG < 1:1136193/137‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCG < 1:2372933/137‑1 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCG < 1:285479/137‑1 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGA < 1:995710/91‑1 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAG > 1:1436708/1‑77 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTC > 1:918912/1‑73 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAA > 1:2415030/1‑60 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTA < 1:1144539/130‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTA > 1:2419226/1‑91 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACAT > 1:2567802/1‑130 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTAT < 1:1594751/139‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTAT < 1:398118/139‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTAT < 1:1487381/139‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCG < 1:902259/115‑1 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCG < 1:1325664/115‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTT < 1:1182816/136‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACC < 1:1009950/72‑1 CATACACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGC < 1:2317516/55‑1 ACTAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGA < 1:2353687/62‑1 TAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGG > 1:2748613/1‑115 TAAATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGG > 1:2325920/1‑115 AATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTTGGCTACGACACC > 1:2827620/1‑138 AATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTTGGCTACGACA > 1:2606009/1‑136 AATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGG < 1:248042/113‑1 ATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATT > 1:2433446/1‑72 ATCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAAT > 1:893836/1‑55 TCAGTAAGTTGGCAGCATCACCAAAGATCAGAATGTTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTG < 1:2682222/113‑1 TAAGTTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTA > 1:930070/1‑62 TTGGCAGCATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTA > 1:1672457/1‑113 GGCAGCATCACCAAAGAGCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGGGGTTTATTATT > 1:1259150/1‑113 ATCACCAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTTGGCTACGACACCGCCGTTATTTCCGGT > 1:674228/1‑135 CAAATATCAGAAGGGTCTAAGGCAGGTCTGAATGAATCCCCAGTTTAATTCCATTTATATATTTTCGATTCCCTTAGTCGCTACATTAGGTGGTTTATTATTTGGCTCCGACACCGCCGTTATTTCCGGTACTGTTGAG < 1:1149462/139‑1 CAAAGATCAGAATGTTCTAAGCCAGGTCTTAATGATTTCCCAGTATAATTCCATTTATATATTTTCTATTCCCTTATTCGTTACATTAGTTGGTTTATTATTTGGCTACGACACCGCCGTTATTTCCGGTACTGTTGAG < 1:1078549/139‑1 CAAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTGGGCTACGACACCGCCGTTATTTCCGGTACTGTTGAG < 1:1907516/139‑1 ATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576923‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAGATCAGAATGGTCTAAGGCAGGTCTGAATGAATACCCAGTATAATTCCAGTTATATATTTTCGATTACCTTAGTCGCTACATTAGGTGGTTTATTATTTGGCTACGACACCGCCGTTATTTCCGGTACTGTTGAG < CP009273/4232212‑4232075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |