New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4432006 =	52 (1.030)	6 (0.000)	3/214	4.5	0.059%	intergenic (‑13/‑193)	msrA/tamA	methionine sulfoxide reductase A/translocation and assembly module for autotransporter export, outer membrane subunit
	?	Exported	= 1103	20142 (0.960)					coding (93/1224 nt)	fdh	formate dehydrogenase from Pseudomonas sp. 101 with an N‑terminal his‑tag
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTT  >  CP009273/4431872‑4432142                                                                                                                                       |                                                                                                                                         tCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGGTGCCTTTTATCAAATAAACTCATGGGGTTGCTCTCCCCaa                                                                                                                                      >  1:1465231/1‑139 (MQ=255) tCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGGGTCGCTCTCCCGaa                                                                                                                                      >  1:1343796/1‑139 (MQ=255) tCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGAGGCGTTTTATCAAATAAAATCCTAGGGTTGCTCTCCCgga                                                                                                                                      >  1:1249306/1‑137 (MQ=255)         aTTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATGCTTTTTATCAAATAAACTCATGGGGTCGCTCTCCCGAAAATCgggc                                                                                                                              >  1:711776/1‑137 (MQ=255)           tGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCCGATGGTTTTTATCCAATAAAATCATGGTGGCGGTCTCCCGAAAATCGGGCAt                                                                                                                            >  1:2124976/1‑139 (MQ=255)           tGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAt                                                                                                                            <  1:1512727/139‑1 (MQ=255)            ggTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt                                                                                                                           <  1:2023277/139‑1 (MQ=255)            ggTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGT‑‑CGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTgg                                                                                                                         <  1:1233624/139‑1 (MQ=255)             gTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCAGATTCTGTTTATCAAATAAACACACGGGGTCGCTCTCCCGAAAGTCgggggttg                                                                                                                          >  1:486459/1‑133 (MQ=255)             gTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCCAATAAACTCATGGGGTCGCTCTCCCCAAAATCGGTCATTg                                                                                                                          >  1:1297482/1‑139 (MQ=255)                aTTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTTTCAAATAAACTCATGGTGTCGCTCTCCCGaaaa                                                                                                                                    >  1:984398/1‑126 (MQ=255)                   gAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTa                                                                                                                    <  1:2720474/139‑1 (MQ=255)                    aGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt                                                                                                                           <  1:1841560/131‑1 (MQ=255)                       gACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAACCCGATGCTTTTTATCAAATAAACTCATGGGGTCGCTCTCCCGaaaa                                                                                                                                    >  1:1279001/1‑119 (MQ=255)                       gACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAg                                                                                                                  <  1:1254478/137‑1 (MQ=255)                         ccGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGt                                                                                                                               <  1:894640/122‑1 (MQ=255)                         ccGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTg                                                                                                              <  1:2135770/139‑1 (MQ=255)                              gACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAAACAGATGCTTTTTATCAAAAAAACTCATGGGGTCGCTCTCCCGAAAATCGGTCATTGGGGGTaaag                                                                                                                 >  1:417283/1‑129 (MQ=255)                                   cATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGGAAACAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGGCATTTGGGTGAAGGATGTAACAaaag                                                                                                     >  1:2669898/1‑138 (MQ=255)                                   cATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAAACAGATGCTTTTTATCAAAAAAAATCATGGGGTCGCCCTCCCCGAAATCGGGCATTTGGGtt                                                                                                                     >  1:2318317/1‑122 (MQ=255)                                             ggCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGc                                                                                           <  1:1246792/138‑1 (MQ=255)                                             ggCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGc                                                                                           <  1:1183726/138‑1 (MQ=255)                                                    ggCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAt                                                                                                                            <  1:963251/98‑1 (MQ=255)                                                      cATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATaa                                                                                  <  1:1910679/138‑1 (MQ=255)                                                       aTCGGGGTGTTACGTCCCGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAacc                                                                                <  1:2171520/139‑1 (MQ=255)                                                         cGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGtt                                                                                                                     <  1:2365738/100‑1 (MQ=255)                                                          ggggTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAaccacc                                                                             <  1:1586934/139‑1 (MQ=255)                                                              tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTTGGGTTAAg                                                                                                                  >  1:2386807/1‑98 (MQ=255)                                                              tgtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGGTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGa                                                                         >  1:1259340/1‑139 (MQ=255)                                                               gtTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGca                                                                                          <  1:1132736/121‑1 (MQ=255)                                                                ttACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAACCTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGaa                                                                        <  1:2672406/138‑1 (MQ=255)                                                                ttACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCa                                                                                                                             <  1:1758867/85‑1 (MQ=255)                                                                   cGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGGTAAGGTTGTaa                                                                                                           >  1:942151/1‑100 (MQ=255)                                                                    gTCCAGGCAGGGCATCGGCGGGTGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCAtt                                                                                                                           <  1:774213/83‑1 (MQ=255)                                                                      ccAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTc                                                                  <  1:999232/138‑1 (MQ=255)                                                                       caggcaggGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTa                                                                <  1:2766729/139‑1 (MQ=255)                                                                          gcaggGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGGGTCGCTCTCCCGAAAATCGGTCCTTGGGGGTaa                                                                                                                   >  1:334543/1‑85 (MQ=255)                                                                                                    tGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGttt                                   <  1:40575/139‑1 (MQ=255)                                                                                                    tGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGt                                     <  1:2808764/137‑1 (MQ=255)                                                                                                              cAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCttt                         <  1:653645/139‑1 (MQ=255)                                                                                                                 aTAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGc                                                                                           <  1:2321451/70‑1 (MQ=255)                                                                                                                     aCTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAAt                                                                       <  1:1891879/86‑1 (MQ=255)                                                                                                                       tCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAAt                                                                                    <  1:660799/71‑1 (MQ=255)                                                                                                                           ggTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAac                                                                                 >  1:897781/1‑70 (MQ=255)                                                                                                                           ggTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGAGTTTAGTCTGCTTTTTAATCCATATTa            <  1:2235173/139‑1 (MQ=255)                                                                                                                             tgtCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATaa                                                                                  <  1:1168035/67‑1 (MQ=255)                                                                                                                              gtCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTg         <  1:1085915/139‑1 (MQ=255)                                                                                                                               tCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAg                                                             >  1:467642/1‑86 (MQ=255)                                                                                                                                 gCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTg                                                                          >  1:2084830/1‑71 (MQ=255)                                                                                                                                 gCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAt      >  1:2798842/1‑139 (MQ=255)                                                                                                                                   tctcCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAtt     <  1:2682412/138‑1 (MQ=255)                                                                                                                                     tcCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGAttttt  >  1:2506191/1‑139 (MQ=255)                                                                                                                                       ccGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGaa                                                                        >  1:2591266/1‑67 (MQ=255)                                                                                                                                       |                                                                                                                                         TCAGGTACATTGGTCATTGAGTGACCGTTGACCGCATGCAGCGTGGCTACGGGCATCGGGGTGTTACGTCCAGGCAGGGCATCGGCGGGGGAAACCAGATGCTTTTTATCAAATAAACTCATGGTGTCGCTCTCCCGAAAATCGGTCATTGGGGTTAAGGTTGTAACAAGAGGCGTATTTGCACACAATAACCACCGTGAATAGGTCTAAAGTAAAACATAAGAAATATTTGGGGTTTAGTCTGCTTTTTAATCCATATTACTGGATTTTT  >  CP009273/4431872‑4432142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.