| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 2,400,028 | Δ9 bp | coding (85‑93/939 nt) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 2400028 | 2400036 | 9 | 75 [0] | [0] 75 | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2400027 | 0 (0.000) | 73 (1.560) | 45/218 | 0.1 | 100% | coding (94/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes |
| ? | CP009273 | 2400037 = | 0 (0.000) | coding (84/939 nt) | lrhA | transcriptional repressor of flagellar, motility and chemotaxis genes | |||||
GTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAAT > CP009273/2399901‑2400160 | aaccaagaagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcaa < 1:498303‑M2/2‑1 (MQ=255) accaagaagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcaaaa > 1:226940‑M2/136‑139 (MQ=255) accaagaagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcaaaa > 1:564502‑M2/136‑139 (MQ=255) gaagttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAgggt > 1:2559785‑M2/131‑138 (MQ=255) agttgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTc < 1:1411655‑M2/10‑1 (MQ=255) tgaatgccatgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGa < 1:700177‑M2/13‑1 (MQ=255) catgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaac < 1:1861101‑M2/21‑1 (MQ=255) catgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaac < 1:2615026‑M2/21‑1 (MQ=255) catgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaa < 1:1704062‑M2/20‑1 (MQ=255) catgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaa < 1:1708931‑M2/20‑1 (MQ=255) tgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaaca > 1:375089‑M2/117‑138 (MQ=255) tgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaaca > 1:2482791‑M2/117‑138 (MQ=255) tgttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaaca > 1:375116‑M2/117‑138 (MQ=255) gttcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaacagc < 1:520738‑M2/24‑1 (MQ=255) tcagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaacagcaa < 1:1136509‑M2/26‑1 (MQ=255) cagttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaacagc < 1:1261393‑M2/24‑1 (MQ=255) ttaacagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACaaa > 1:436835‑M2/110‑139 (MQ=255) acagtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGt < 1:422144‑M2/33‑1 (MQ=255) agtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGt > 1:575931‑M2/105‑137 (MQ=255) agtttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGt > 1:445864‑M2/105‑137 (MQ=255) tttgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgatgacttacggcggactgagtacgacacacagcggcagaAAAAGGGTTCAGATCGGCAACAGCAACAAATGtt > 1:2684464‑M2/103‑136 (MQ=255) tgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGtt < 1:601305‑M2/9‑1 (MQ=255) tgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTca > 1:1869471‑M2/101‑138 (MQ=255) tgttgcgaccgtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTca > 1:1968296‑M2/101‑138 (MQ=255) gtgacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgca > 1:2025419‑M2/91‑109 (MQ=255) gacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacggcacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtc < 1:1799440‑M2/51‑1 (MQ=255) gacgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtc > 1:1062503‑M2/89‑139 (MQ=255) gacgagcgaacagttcgttcccaacgagttgttccagacgctgcatgtgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtc < 1:1799413‑M2/51‑1 (MQ=255) cgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg < 1:544146‑M2/52‑1 (MQ=255) cgagcgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg < 1:1365792‑M2/52‑1 (MQ=255) cgaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGtt > 1:493301‑M2/83‑139 (MQ=255) gaacagttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATcgaggtcgaggt < 1:2388562‑M2/56‑1 (MQ=255) ttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtcg < 1:2765926‑M2/52‑1 (MQ=255) ttctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATc > 1:567747‑M2/76‑139 (MQ=255) ctttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCgg < 1:1059383‑M2/66‑1 (MQ=255) tttcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGa < 1:1988655‑M2/67‑1 (MQ=255) tcccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaac < 1:1054214‑M2/21‑1 (MQ=255) ccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTc < 1:63016‑M2/10‑1 (MQ=255) ccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaac < 1:2181133‑M2/21‑1 (MQ=255) ccaacgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGAt < 1:616499‑M2/71‑1 (MQ=255) acgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTa > 1:1342991‑M2/66‑127 (MQ=255) acgagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGAttt > 1:2051629‑M2/66‑138 (MQ=255) gagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:627552‑M2/76‑1 (MQ=255) gagttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:1571772‑M2/76‑1 (MQ=255) gttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc < 1:621942‑M2/77‑1 (MQ=255) gttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc < 1:312254‑M2/77‑1 (MQ=255) gttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc < 1:1870126‑M2/77‑1 (MQ=255) ttgttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAAt > 1:2477634‑M2/61‑91 (MQ=255) gttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGgcaa > 1:1487647‑M2/59‑78 (MQ=255) gttccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAAt > 1:757219‑M2/59‑89 (MQ=255) tccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa < 1:445207‑M2/83‑1 (MQ=255) tccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCa < 1:2433992‑M2/83‑1 (MQ=255) ccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCat < 1:1991896‑M2/84‑1 (MQ=255) ccagacgctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTAAGATCGGCAACAGCAACAAATGTTCTcag < 1:968097‑M2/39‑1 (MQ=255) gctgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCa < 1:218197‑M2/76‑1 (MQ=255) tgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATc > 1:358153‑M2/48‑139 (MQ=255) tgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATc > 1:1939898‑M2/48‑139 (MQ=255) tgcatttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATc > 1:1527501‑M2/48‑139 (MQ=255) catttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTAAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgagg > 1:2391650‑M2/46‑94 (MQ=255) atttgctgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACt < 1:569435‑M2/95‑1 (MQ=255) ctgacttacggcggactgattacgacacacagcggcagcAAAAGGGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCatat > 1:1642654‑M2/40‑125 (MQ=255) tgacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg < 1:1782441‑M2/100‑1 (MQ=255) gacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggc < 1:1651380‑M2/102‑1 (MQ=255) gacttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggc < 1:102912‑M2/102‑1 (MQ=255) ttacggcggactgagtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTggcggc < 1:2000063‑M2/105‑1 (MQ=255) cggactgagtacgacacacagcggcagcAAAAGTGTGCAGATCGGCAACCGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGGTAATTAGCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATa < 1:19910‑M2/110‑1 (MQ=255) agtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGAtcgaggtc < 1:1067965‑M2/51‑1 (MQ=255) agtacgacacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCAc < 1:2151749‑M2/77‑1 (MQ=255) cacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTa < 1:319616‑M2/80‑1 (MQ=255) cacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTg < 1:1695573‑M2/100‑1 (MQ=255) cacacagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGATAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAAt > 1:1271612‑M2/15‑138 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAAtt > 1:2491362‑M2/12‑72 (MQ=255) acagcggcagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCatata > 1:727774‑M2/12‑98 (MQ=255) cagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATAtatta > 1:1743954‑M2/5‑94 (MQ=255) cagcAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATa > 1:271190‑M2/5‑114 (MQ=255) | GTTGAATGCCATGTTCAGTTAACAGTTTGTTGCGACCGTGACGAGCGAACAGTTCTTTCCCAACGAGTTGTTCCAGACGCTGCATTTGCTGACTTACGGCGGACTGAGTACGACACACAGCGGCAGCTGCGGCAGCAAAAGTGTTCAGATCGGCAACAGCAACAAATGTTCTCAGCAGATCGAGGTCGAGGTTAATTATCGGACGATTTGCACTTATCATATATTATCACTTACTGGCGGCTCATACTGAGCTGGTTAAT > CP009273/2399901‑2400160 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |