| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 270860 | NA (NA) | 71 (1.290) | 31/134 | 0.2 | 85.5% | noncoding (320/1221 nt) | IS30 | repeat region |
| ? | CP009273 | = 1104830 | 12 (0.220) | coding (40/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein | |||||
ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/270794‑270860‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAGTAA < CP009273/1104830‑1104764 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATTATCTCATATCAGGGACTAGTTCGCACCTTCCT > 1:4083805/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2405605/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCT > 1:2923540/1‑68ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTACCT > 1:449450/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:708263/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:484339/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:4613778/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:4298815/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:4295781/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:86242/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT < 1:3937498/68‑1 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3912297/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3493729/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3415489/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3173512/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3117412/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:921473/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:2715844/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:3309516/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:1479666/1‑68 TGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTT > 1:150183/1‑68 TGAACCCTGTTCTATGGCTCCAGATCAAACACATGATCTCATCTCAGGGACTTGTTAGCACCTTCCTT > 1:4421986/1‑68 tAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:119554/67‑1 GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:1889328/68‑1 GAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTA < 1:386322/68‑1 ACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAAC < 1:4583051/68‑1 ACCCTGTTCTATGGCTCCAGATGACAAACAAGATCTCATATCAGGGACTTGATCGCACCATCCTTAAC < 1:1199009/68‑1 CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACA < 1:229915/68‑1 CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACAT > 1:917019/1‑68 CTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATT < 1:4033162/68‑1 CTGTTCTATGGCACCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCTTAACATT < 1:2797321/68‑1 ATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAG > 1:1755100/1‑68 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA < 1:663578/68‑1 GGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA > 1:2865633/1‑68 GGCTCCAGATGACAAACATAATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCA < 1:1120782/68‑1 CTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACT < 1:3917977/68‑1 CAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAA < 1:1520983/68‑1 AGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAAC < 1:1706345/68‑1 GACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAAC < 1:1467003/68‑1 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCA < 1:4122263/68‑1 ACATGATCTCATATCACGGACTTGATCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATT > 1:2534504/1‑68 CTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCA < 1:128534/68‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCA < 1:1163563/68‑1 CTCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCA > 1:3191021/1‑68 TCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCAT > 1:3959375/1‑68 TCATATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCAT > 1:2378448/1‑68 ATCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGT > 1:4549566/1‑68 TCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCACCGCATTTTCATCATTTGTA > 1:4450820/1‑68 TCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTA > 1:3955668/1‑68 TCAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTA > 1:4209086/1‑68 catGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAG < 1:3105423/65‑1 CAGGGACTTGTTCGCACCTTCCTTAACATTACTGCTGCACTCAACCAACGCATTTTCATCATTTGTAG < 1:4623653/68‑1 CAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAG < 1:3191223/68‑1 CAGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAG < 1:3372866/68‑1 AGGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGT < 1:4092162/68‑1 GGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTT > 1:4041701/1‑68 GGGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTT > 1:3621739/1‑68 GGACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTT > 1:3388072/1‑68 GACTTGTTCGCACCTTCCTTGACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTA > 1:3727335/1‑68 GACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCAGTTGTAGTTTA > 1:3973831/1‑68 GACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTACATCATTTGTAGTTTA > 1:1789655/1‑68 ACTTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTAT > 1:3116887/1‑68 TTGTTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGT < 1:1444818/68‑1 TTCGCACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTC > 1:2543069/1‑68 CACCTTCCTTAACATTACTGTAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAA < 1:1177080/68‑1 CACCTTCCTTAACATTACTGTAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAA < 1:1172238/68‑1 ACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAAa > 1:3275656/1‑67 ACCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCAACATTTGTAGTTTATGTTTCATAAT > 1:2390078/1‑68 CCTTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATT < 1:3927450/68‑1 TTCCTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAG < 1:1092204/68‑1 CTTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAGTAA < 1:1330578/68‑1 ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/270794‑270860‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAACATTACTGCAGCACTCAACCAACGCATTTTCATCATTTGTAGTTTATGTTTCATAATTAGTAA < CP009273/1104830‑1104764 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |