| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 270860 | NA (NA) | 71 (1.290) | 31/134 | 0.2 | 85.5% | noncoding (320/1221 nt) | IS30 | repeat region |
| ? | CP009273 | = 1104830 | 12 (0.220) | coding (40/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein | |||||
Only 100 of 152 total aligned reads displayed.
TTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGC > CP009273/1104764‑1104897 | aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAc > 1:1801498‑M1/64‑68 (MQ=255)aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAc > 1:76640‑M1/64‑68 (MQ=255) aatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAccc > 1:183302‑M1/62‑68 (MQ=255) cTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaa < 1:1092204‑M2/68‑5 (MQ=255) tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTg > 1:671428‑M1/60‑68 (MQ=255) tttaTGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggt > 1:3275656‑M2/2‑61 (MQ=255) aTTATGAAACATAAACTACAAATGTTGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggt > 1:2390078‑M2/1‑61 (MQ=255) ttATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTACAGTAATGTTAAggaaggtg < 1:1172238‑M2/68‑9 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:1931519‑M1/12‑1 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:2543450‑M1/12‑1 (MQ=255) agaaatgaaaagactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:2051894‑M1/12‑1 (MQ=255) gAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaa > 1:2543069‑M2/1‑56 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTatacttc < 1:591609‑M1/17‑4 (MQ=255) aCATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaa < 1:1444818‑M2/68‑16 (MQ=255) aTAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagt > 1:3116887‑M2/1‑51 (MQ=255) tAAACTACAACTGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtc > 1:3973831‑M2/1‑50 (MQ=255) tAAACTACAAATGATGTAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtc > 1:1789655‑M2/1‑50 (MQ=255) tAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTCAAggaaggtgcgaacaagtc > 1:3727335‑M2/1‑50 (MQ=255) aaaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtcc > 1:3388072‑M2/1‑49 (MQ=255) aaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccc > 1:3621739‑M2/1‑48 (MQ=255) aCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccct < 1:4092162‑M2/68‑22 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctg < 1:3191223‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccatg < 1:3105423‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCAGCAGTAATGTTAAggaaggtgcgaacaagtccctg < 1:4623653‑M2/68‑23 (MQ=255) tACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:4209086‑M2/1‑45 (MQ=255) tACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:3955668‑M2/1‑45 (MQ=255) tACAAATGATGAAAATGCGGTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:4450820‑M2/1‑45 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTggg > 1:2652209‑M1/41‑68 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTggg > 1:1110529‑M1/41‑68 (MQ=255) aCAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:4549566‑M2/1‑44 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGc > 1:2927781‑M1/40‑68 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGc > 1:4477824‑M1/40‑68 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGc > 1:2988113‑M1/40‑68 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:3366891‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:4039588‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:2953694‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:3161255‑M1/30‑1 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCtt > 1:1389120‑M1/38‑68 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag < 1:1163563‑M2/68‑30 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag > 1:3191021‑M2/1‑39 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag < 1:128534‑M2/68‑30 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTc > 1:148265/1‑68 (MQ=255) cgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAg < 1:3803015‑M1/35‑1 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1115252‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1387757‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1570318‑M1/33‑68 (MQ=255) gagaagaatctccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:2011936‑M1/33‑68 (MQ=255) gaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTAt > 1:1657497‑M1/31‑68 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:4761305‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:798159‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:1951577‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:1848082‑M1/40‑1 (MQ=255) atttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtgatg < 1:418114‑M1/43‑1 (MQ=255) atttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtgatg < 1:1572803‑M1/43‑1 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc > 1:3808655‑M1/21‑68 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc < 1:1218178‑M1/48‑1 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc < 1:1128190‑M1/48‑1 (MQ=255) gttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 1:1706345‑M2/68‑46 (MQ=255) ccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCg < 1:109491‑M1/49‑1 (MQ=255) ttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg < 1:1520983‑M2/68‑47 (MQ=255) ttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCaaa < 1:3973544‑M1/53‑1 (MQ=255) aGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag < 1:3917977‑M2/68‑50 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc < 1:663578‑M2/68‑52 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc > 1:2865633‑M2/1‑17 (MQ=255) cgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagcaag > 1:572244‑M1/11‑68 (MQ=255) cacaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCGGTATTGATGATGTCGCAaagcaag > 1:2181580‑M1/11‑68 (MQ=255) gcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagcaagc > 1:1457285‑M1/10‑68 (MQ=255) accttccTCAACCCTGTAAACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTc > 1:3692713‑M1/8‑68 (MQ=255) ttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:2873297‑M1/5‑68 (MQ=255) ttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:2636822‑M1/5‑68 (MQ=255) ttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:1527413‑M1/5‑68 (MQ=255) aaTGTTAAggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctggtgccatagaacag < 1:2797321‑M2/68‑61 (MQ=255) aTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 1:917019‑M2/1‑7 (MQ=255) tGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:229915‑M2/68‑63 (MQ=255) gTTAAggatggtgcgatcaagtccctgatatgagatcttgtttgtcatctggagccatagaacagggt < 1:1199009‑M2/68‑64 (MQ=255) gTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 1:4583051‑M2/68‑64 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc < 1:1889328‑M2/68‑66 (MQ=255) tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtta < 1:119554‑M2/68‑66 (MQ=255) tAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGATCAATCTTTa > 1:3332999/1‑68 (MQ=255) aaggaaggtgctaacaagtccctgagatgagatcatgtgtttgatctggagccatagaacagggttca > 1:4421986‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:86242‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:3309516‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:3415489‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:3173512‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:1479666‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:3912297‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca < 1:3937498‑M2/68‑67 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:2715844‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:4298815‑M2/1‑2 (MQ=255) aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttca > 1:4295781‑M2/1‑2 (MQ=255) aaCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAg > 1:4316895/1‑68 (MQ=255) aggtaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat > 1:449450‑M2/1‑1 (MQ=255) aggaaggtgcgaactagtccctgatatgagataatgtttgtcatctggagccatagaacagggttcat > 1:4083805‑M2/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat > 1:2405605‑M2/1‑1 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc < 1:1142134/68‑1 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc > 1:933785/1‑68 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc > 1:1651773/1‑68 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc > 1:2106885/1‑68 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc > 1:4123378/1‑68 (MQ=255) aCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGc > 1:364009/1‑68 (MQ=255) | TTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTTTAGC > CP009273/1104764‑1104897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |