New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1104827 =	8 (0.140)	70 (1.270)	33/134	0.1	89.7%	coding (37/1536 nt)	opgG	osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein
	?	CP009273	= 1391495	NA (NA)					intergenic (+146/‑127)	insH1/ynaJ	IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein

AAGATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1104893‑1104827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  <  CP009273/1391495‑1391429                                                                                                                                        AAGATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAG                                                                    <  1:1443463/68‑1    ATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAA                                                                 >  1:2873297/1‑68    ATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAA                                                                 >  1:1631428/1‑68    ATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAA                                                                 >  1:2636822/1‑68    ATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAA                                                                 >  1:1527413/1‑68      TGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGG                                                               <  1:332668/68‑1       GAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTTTACAGGGTTGAGGAAGGT                                                              >  1:3692713/1‑68       GAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGCATACAGGGTTAAGGAAGGT                                                              <  1:847842/68‑1         GCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGC                                                            >  1:1457285/1‑68          CTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCG                                                           >  1:572244/1‑68          CTTGCTTTGCGACATCATCAATACCGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGtg                                                           >  1:2181580/1‑66               TTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAA                                                      <  1:3973544/68‑1                 TGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGC                                                    <  1:1819932/68‑1                   CGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGG                                                  <  1:109491/68‑1                    GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 <  1:1218178/68‑1                    GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 <  1:639958/68‑1                    GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 >  1:3808655/1‑68                    GACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGG                                                 <  1:1128190/68‑1                         CATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAAT                                            <  1:418114/68‑1                         CATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAAT                                            <  1:1572803/68‑1                            CAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCT                                         <  1:4761305/68‑1                            CAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCT                                         <  1:1848082/68‑1                            CAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCT                                         <  1:1951577/68‑1                            CAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCT                                         <  1:798159/68‑1                              ATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTC                                       >  1:1657497/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAGATTCTTCTC                                     >  1:2011936/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:1570318/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:1115252/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:2802580/1‑68                                ACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                     >  1:1387757/1‑68                                 CTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                    <  1:3803015/68‑1                                  TGAAAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGG                                   >  1:3186762/1‑68                                     AAGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTG                                >  1:1389120/1‑68                                      AGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                               <  1:3366891/68‑1                                      AGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                               <  1:3161255/68‑1                                      AGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                               <  1:4039588/68‑1                                      AGCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                               <  1:2953694/68‑1                                      AGCCCAGCATGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGA                               <  1:1106298/68‑1                                       GCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC                              >  1:4477824/1‑68                                       GCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC                              >  1:2988113/1‑68                                       GCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC                              >  1:2927781/1‑68                                       GCCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGAC                              >  1:1692676/1‑68                                        CCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT                             >  1:2652209/1‑68                                        CCCAGCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT                             >  1:1110529/1‑68                                            GCTTGAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGT                         <  1:1162465/68‑1                                                GAAGATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                     <  1:2029850/68‑1                                                GAAGATGTATACAGGGGTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATT                     <  1:4297161/68‑1                                                   gaaGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  <  1:591609/65‑1                                                   GATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  <  1:2963006/68‑1                                                   GATGTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA                  >  1:4191358/1‑68                                                      GTATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTT               <  1:1851945/68‑1                                                        ATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCTTTTCATTTCT             <  1:2051894/68‑1                                                        ATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT             <  1:1931519/68‑1                                                        ATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT             <  1:1209886/68‑1                                                        ATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT             <  1:2543450/68‑1                                                        ATACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT             <  1:3019606/68‑1                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTCAGTCAGTTCATTTCTTC           >  1:4529592/1‑68                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           <  1:153932/68‑1                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:989065/1‑68                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:2157675/1‑68                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC           >  1:3256519/1‑68                                                          ACAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTAAGTCATTTCATTTCTTa           >  1:3660957/1‑67                                                           CAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCA          >  1:4402019/1‑68                                                           CAGGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCA          >  1:671428/1‑68                                                             GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATt        >  1:183302/1‑67                                                             GGGTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        >  1:4450964/1‑68                                                             GGGTTAAGGAAGGTGCGAATAAGCGGGGAAAATCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATG        >  1:2656200/1‑68                                                               GTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT      >  1:1801498/1‑68                                                               GTTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTT      >  1:76640/1‑68                                                                   AGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  >  1:4134253/1‑68                                                                                                                                        AAGATTGAGCTTGCTTTGCGACATCATCAATACTGAAAGCCCAGCTTGAAGATGTATACAGGGTTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/1104893‑1104827 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAG  <  CP009273/1391495‑1391429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.