| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1104827 = | 8 (0.140) | 70 (1.270) | 33/134 | 0.1 | 89.7% | coding (37/1536 nt) | opgG | osmoregulated periplasmic glucan (OPG) biosynthesis periplasmic protein |
| ? | CP009273 | = 1391495 | NA (NA) | intergenic (+146/‑127) | insH1/ynaJ | IS5 transposase and trans‑activator/DUF2534 family putative inner membrane protein | |||||
Only 100 of 124 total aligned reads displayed.
GTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTT > CP009273/1104760‑1104893 | gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:186042/68‑1 (MQ=255)gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:267717/68‑1 (MQ=255)gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGt < 1:2975982/68‑1 (MQ=255)gTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGCTGGTTGAGTGCTGCAGTAATGt < 1:817918/68‑1 (MQ=255)ctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcct > 1:4134253‑M1/68‑68 (MQ=255) ttACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAg < 1:1330578‑M2/68‑2 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAc > 1:1801498‑M1/64‑68 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagattttccccgcttattcgcaccttccTTAAccc > 1:2656200‑M1/62‑68 (MQ=255) catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAccc > 1:4450964‑M1/62‑68 (MQ=255) aatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAccc > 1:183302‑M1/62‑68 (MQ=255) cTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaa < 1:1092204‑M2/68‑5 (MQ=255) tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTg > 1:671428‑M1/60‑68 (MQ=255) tgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTg > 1:4402019‑M1/60‑68 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGt < 1:153932‑M1/10‑1 (MQ=255) gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGt > 1:3256519‑M1/59‑68 (MQ=255) aaTTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaagg < 1:3927450‑M2/68‑7 (MQ=255) tttaTGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggt > 1:3275656‑M2/2‑61 (MQ=255) aTTATGAAACATAAACTACAAATGTTGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggt > 1:2390078‑M2/1‑61 (MQ=255) ttATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTACAGTAATGTTAAggaaggtg < 1:1177080‑M2/68‑9 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:2543450‑M1/12‑1 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:3019606‑M1/12‑1 (MQ=255) agaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:1209886‑M1/12‑1 (MQ=255) agaaatgaaaagactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGtat < 1:2051894‑M1/12‑1 (MQ=255) aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATAc < 1:1851945‑M1/14‑1 (MQ=255) gAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaa > 1:2543069‑M2/1‑56 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTatacttc < 1:591609‑M1/17‑4 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATc < 1:2963006‑M1/17‑1 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATc > 1:4191358‑M1/52‑68 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTc < 1:2029850‑M1/20‑1 (MQ=255) aTAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagt > 1:3116887‑M2/1‑51 (MQ=255) tAAACTACAACTGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtc > 1:3973831‑M2/1‑50 (MQ=255) tAAACTACAAATGATGTAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtc > 1:1789655‑M2/1‑50 (MQ=255) tAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTCAAggaaggtgcgaacaagtc > 1:3727335‑M2/1‑50 (MQ=255) aaaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtcc > 1:3388072‑M2/1‑49 (MQ=255) actgagtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGc < 1:1162465‑M1/24‑1 (MQ=255) aaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccc > 1:3621739‑M2/1‑48 (MQ=255) aaCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccc > 1:4041701‑M2/1‑48 (MQ=255) aCTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccct < 1:4092162‑M2/68‑22 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctg < 1:3191223‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctg < 1:3372866‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccatg < 1:3105423‑M2/68‑23 (MQ=255) cTACAAATGATGAAAATGCGTTGGTTGAGTGCAGCAGTAATGTTAAggaaggtgcgaacaagtccctg < 1:4623653‑M2/68‑23 (MQ=255) tACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:3955668‑M2/1‑45 (MQ=255) tACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:4209086‑M2/1‑45 (MQ=255) tACAAATGATGAAAATGCGGTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctga > 1:4450820‑M2/1‑45 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTggg > 1:1110529‑M1/41‑68 (MQ=255) aCAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgat > 1:4549566‑M2/1‑44 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGc > 1:2927781‑M1/40‑68 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGc > 1:1692676‑M1/40‑68 (MQ=255) gtcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGc > 1:4477824‑M1/40‑68 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCATGCTGGGCt < 1:1106298‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:3366891‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:2953694‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:4039588‑M1/30‑1 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCt < 1:3161255‑M1/30‑1 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCtt > 1:1389120‑M1/38‑68 (MQ=255) atgatgAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatga > 1:3959375‑M2/1‑40 (MQ=255) atgatgAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatga > 1:2378448‑M2/1‑40 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag > 1:3191021‑M2/1‑39 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgag < 1:1163563‑M2/68‑30 (MQ=255) tgatgaAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTc > 1:148265/1‑68 (MQ=255) cgagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAg < 1:3803015‑M1/35‑1 (MQ=255) atgaAAATGCGTTGGTTGAGTGCTGCAGAAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAg > 1:2559970/1‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:2802580‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1115252‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1387757‑M1/33‑68 (MQ=255) gagaagaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:1570318‑M1/33‑68 (MQ=255) gagaagaatctccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGt > 1:2011936‑M1/33‑68 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:1951577‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:4761305‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:1848082‑M1/40‑1 (MQ=255) agaatttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtg < 1:798159‑M1/40‑1 (MQ=255) atttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtgatg < 1:418114‑M1/43‑1 (MQ=255) atttccccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATtgatg < 1:1572803‑M1/43‑1 (MQ=255) gttggttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtc < 1:1467003‑M2/68‑42 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc < 1:1128190‑M1/48‑1 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc < 1:1218178‑M1/48‑1 (MQ=255) cccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTc < 1:639958‑M1/48‑1 (MQ=255) gttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 1:1706345‑M2/68‑46 (MQ=255) ccgcttattcgcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCg < 1:109491‑M1/49‑1 (MQ=255) ttgAGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg < 1:1520983‑M2/68‑47 (MQ=255) aGTGCTGCAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag < 1:3917977‑M2/68‑50 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagattatgtttgtcatctggagcc < 1:1120782‑M2/68‑52 (MQ=255) tgctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagcc < 1:663578‑M2/68‑52 (MQ=255) gctgcAGTAATGTTATCCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGCTGATGTCGCAaagca > 1:3731623/1‑68 (MQ=255) ctgcAGTAATGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:1755100‑M2/1‑15 (MQ=255) cacaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCGGTATTGATGATGTCGCAaagcaag > 1:2181580‑M1/11‑68 (MQ=255) gcaccttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAaagcaagc > 1:1457285‑M1/10‑68 (MQ=255) accttccTTAACCCTGTATGCATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTc < 1:847842‑M1/61‑1 (MQ=255) accttccTCAACCCTGTAAACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTc > 1:3692713‑M1/8‑68 (MQ=255) ttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:2873297‑M1/5‑68 (MQ=255) ttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:2636822‑M1/5‑68 (MQ=255) ttccTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAAt > 1:1631428‑M1/5‑68 (MQ=255) aaTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:4033162‑M2/68‑61 (MQ=255) aaTGTTAAggaaggtgcgaacaagtcactgatatgagatcatgtttgtcatctggtgccatagaacag < 1:2797321‑M2/68‑61 (MQ=255) aTGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 1:917019‑M2/1‑7 (MQ=255) tGTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg < 1:229915‑M2/68‑63 (MQ=255) gTTAAggatggtgcgatcaagtccctgatatgagatcttgtttgtcatctggagccatagaacagggt < 1:1199009‑M2/68‑64 (MQ=255) gTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt < 1:4583051‑M2/68‑64 (MQ=255) cTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCtt < 1:1443463‑M1/67‑1 (MQ=255) | GTGCTTACTAATTATGAAACATAAACTACAAATGATGAAAATGCGTTGGTTGAGTGCTGCAGTAATGTTAACCCTGTATACATCTTCAAGCTGGGCTTTCAGTATTGATGATGTCGCAAAGCAAGCTCAATCTT > CP009273/1104760‑1104893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |