| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3576788 = | NA (NA) | 64 (1.160) | 35/134 | 0.1 | 95.5% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | CP009273 | = 4209762 | 3 (0.050) | coding (1239/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576853‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < CP009273/4209762‑4209696 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA > 1:2397508/1‑68ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA > 1:2160623/1‑68ACAGAAGCCACTGGAGCACCACAAAAACACCATCATACACTAAATCAGTAAGTAGGCAGCATCACCAA > 1:2830528/1‑68 CAGACGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAG < 1:4012902/68‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAG < 1:185761/68‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCATGATGG > 1:4691760/1‑68 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGG > 1:952018/1‑68 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGG > 1:2439391/1‑68 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGG > 1:230921/1‑68 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGG > 1:2434536/1‑68 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGC > 1:873526/1‑68 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGC < 1:3544019/68‑1 CCACTGGAGCACCTCAAAAACACCATCATACACTTATTCAGTAAGTTGGCAGCATCACCAAGATGACG > 1:2729075/1‑68 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCG > 1:3158938/1‑68 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAAT < 1:3736453/68‑1 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCACCATCACCCAGAAGGCGAATC < 1:3257176/68‑1 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCA > 1:1595978/1‑68 GGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCA < 1:869822/68‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA < 1:3436744/68‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA > 1:3666059/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA > 1:372468/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA < 1:4580580/68‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA < 1:1508305/68‑1 AGCACCTCAAAAACACCATCATACACAAAATAAGTAAGTTGGCAGCAACACCAAGATGGCGAATAACA > 1:2389330/1‑68 AACACGATCATACACTAAATCAGTAAGTTGGCAGCATCCCCAAGATGGCGAATCACAAATTGTTAGCC > 1:4105043/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCC > 1:3767303/1‑68 ACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCG > 1:1501227/1‑68 TACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTG < 1:3222129/68‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA > 1:4125945/1‑68 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA > 1:3901472/1‑68 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA < 1:1553805/68‑1 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGCATCACAATTTGTTCGCCGAGATCGGTGATT > 1:2218445/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCTCAATTTGTTCGCCGAGATCGGTGATT > 1:986684/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:3051623/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:3697322/1‑68 CTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTT < 1:85067/68‑1 CTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTT > 1:122907/1‑68 CTAAATCAGTAAGTTGGCAGCAACACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTT < 1:3807433/68‑1 ATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTC > 1:1316150/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:4691917/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:83841/1‑68 GTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCT > 1:903292/1‑68 AAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGC > 1:3489937/1‑68 AAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGC < 1:1312509/68‑1 AAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGC < 1:3809239/68‑1 AGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCT > 1:4292359/1‑68 AGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCT > 1:4721859/1‑68 TTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTC < 1:3044485/68‑1 TTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTC < 1:1365498/68‑1 TTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTC < 1:9865/68‑1 TTGGCACCATCACCAAGATGGCCAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTC < 1:3427837/68‑1 CAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGA > 1:839456/1‑68 CAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGA > 1:803960/1‑68 CAGCATCACCAAGATGGCGAATCACAATTTGTACGCCGAGATCGGTGATTTTTTCCGCTGCATCCTGA > 1:1138323/1‑68 AGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAA > 1:4154117/1‑68 GCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCGGCTGCTTCCTGAAG < 1:2080148/68‑1 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA < 1:1494812/68‑1 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA < 1:1846514/68‑1 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA < 1:3652132/68‑1 ATCACCAAGATCGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA < 1:3485670/68‑1 TCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAG > 1:1663274/1‑68 CACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGT < 1:2011804/68‑1 CCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAA < 1:4032469/68‑1 CAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT > 1:1598087/1‑68 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576853‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < CP009273/4209762‑4209696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |