| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3576788 = | NA (NA) | 64 (1.160) | 35/134 | 0.1 | 95.5% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | CP009273 | = 4209762 | 3 (0.050) | coding (1239/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAGGTCAGCAGTTGCGC > CP009273/4209696‑4209828 | aTTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTg > 1:1598087‑M2/1‑67 (MQ=255) ttACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTgg < 1:4032469‑M2/68‑3 (MQ=255) aCTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtg < 1:2011804‑M2/68‑5 (MQ=255) cTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtga > 1:1663274‑M2/1‑63 (MQ=255) tGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCGATCTTggtgat < 1:3485670‑M2/68‑7 (MQ=255) tGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgat < 1:3652132‑M2/68‑7 (MQ=255) tGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgat < 1:1494812‑M2/68‑7 (MQ=255) tGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgat < 1:1846514‑M2/68‑7 (MQ=255) cTTCAGGAAGCAGCCGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgc < 1:2080148‑M2/68‑9 (MQ=255) ttCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgct > 1:4154117‑M2/1‑59 (MQ=255) tCAGGATGCAGCGGAAAAAATCACCGATCTCGGCGTACAAATTGTGATTCGCCATCTTggtgatgctg > 1:1138323‑M2/1‑58 (MQ=255) tCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctg > 1:839456‑M2/1‑58 (MQ=255) tCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctg > 1:803960‑M2/1‑58 (MQ=255) ggAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAgcggc < 1:3014176/68‑1 (MQ=255) gAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTGGCCATCTTggtgatggtgccaa < 1:3427837‑M2/68‑15 (MQ=255) gAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaa < 1:1365498‑M2/68‑15 (MQ=255) gAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaa < 1:3044485‑M2/68‑15 (MQ=255) gAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaa < 1:9865‑M2/68‑15 (MQ=255) agcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaact > 1:4721859‑M2/1‑52 (MQ=255) agcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaact > 1:4292359‑M2/1‑52 (MQ=255) gcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaactt < 1:3809239‑M2/68‑18 (MQ=255) gcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaactt < 1:1312509‑M2/68‑18 (MQ=255) gcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaactt > 1:3489937‑M2/1‑51 (MQ=255) gcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGAt > 1:2870601/1‑68 (MQ=255) agcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttac > 1:903292‑M2/1‑49 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:4691917‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:83841‑M2/1‑46 (MQ=255) gAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgat > 1:1316150‑M2/1‑45 (MQ=255) aaaaaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGGGGCGGATGGTGCCGc < 1:1535290/68‑1 (MQ=255) aaaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgttgctgccaacttactgatttag < 1:3807433‑M2/68‑28 (MQ=255) aaaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttag > 1:122907‑M2/1‑41 (MQ=255) aaaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttag < 1:85067‑M2/68‑28 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:3051623‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:3697322‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATGCGCCATCTTggtgatgctgccaacttactgatttagt > 1:2218445‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGAGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:986684‑M2/1‑40 (MQ=255) tCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgt < 1:1553805‑M2/68‑31 (MQ=255) tCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgt > 1:4125945‑M2/1‑38 (MQ=255) tCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgt > 1:3901472‑M2/1‑38 (MQ=255) cACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgta < 1:3222129‑M2/68‑32 (MQ=255) cGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgt > 1:1501227‑M2/1‑28 (MQ=255) ggCTAACAATTTGTGATTCGCCATCTTggggatgctgccaacttactgatttagtgtatgatcgtgtt > 1:4105043‑M2/1‑27 (MQ=255) ggCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:3767303‑M2/1‑27 (MQ=255) tgttATTCGCCATCTTggtgttgctgccaacttacttattttgtgtatgatggtgtttttgaggtgct > 1:2389330‑M2/1‑16 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:372468‑M2/1‑16 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct < 1:1508305‑M2/68‑53 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct < 1:3436744‑M2/68‑53 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct < 1:4580580‑M2/68‑53 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:3666059‑M2/1‑16 (MQ=255) tgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc > 1:1595978‑M2/1‑14 (MQ=255) tgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctcc < 1:869822‑M2/68‑55 (MQ=255) gATTCGCCTTCTGggtgatggtgccaacttactgatttagtgtatgatggtgtttttgaggtgctcca < 1:3257176‑M2/68‑56 (MQ=255) aTTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag < 1:3736453‑M2/68‑57 (MQ=255) cGTCATCTTggtgatgctgccaacttactgaataagtgtatgatggtgtttttgaggtgctccagtgg > 1:2729075‑M2/1‑9 (MQ=255) cGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg > 1:3158938‑M2/1‑9 (MQ=255) gCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 1:3544019‑M2/68‑61 (MQ=255) gCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc > 1:873526‑M2/1‑8 (MQ=255) ccATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 1:2434536‑M2/1‑7 (MQ=255) ccATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 1:2439391‑M2/1‑7 (MQ=255) ccATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 1:230921‑M2/1‑7 (MQ=255) ccATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 1:952018‑M2/1‑7 (MQ=255) ccATCATggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 1:4691760‑M2/1‑7 (MQ=255) cTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg < 1:185761‑M2/68‑66 (MQ=255) cTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcgtctg < 1:4012902‑M2/68‑66 (MQ=255) ttggtgatgctgcctacttactgatttagtgtatgatggtgtttttgtggtgctccagtggcttctgt > 1:2830528‑M2/1‑2 (MQ=255) ttggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:2160623‑M2/1‑2 (MQ=255) ttggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:2397508‑M2/1‑2 (MQ=255) | ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAGGTCAGCAGTTGCGC > CP009273/4209696‑4209828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |