| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2060834 | NA (NA) | 4 (0.070) | 4/132 | 4.6 | 6.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3654548 = | 55 (1.000) | coding (775/3114 nt) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTG > CP009273/2060767‑2060899 | gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:247433/68‑1 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:3999679/68‑1 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:1428002/68‑1 (MQ=35)gatgaACCCTGTTCCATGGCTCCAGAAGACAACCATGATCTCATATCAGGGACTTGTTCGCACCTTcc < 1:2580957/68‑1 (MQ=255) tgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCt > 1:725102/1‑68 (MQ=35) tgaACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCt > 1:2948843/1‑68 (MQ=35) aCCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCgaga > 1:3265897/1‑68 (MQ=255) aCCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGa > 1:4327801/1‑68 (MQ=37) cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGaa > 1:1031205/1‑68 (MQ=39) cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGaa > 1:1656230/1‑68 (MQ=39) cccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGaa > 1:1329989/1‑68 (MQ=39) ccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGCCTTGTTCGCACCTTCCCTAGAac > 1:4516450/1‑68 (MQ=255) ccTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAac > 1:3396716/1‑68 (MQ=40) acTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAac > 1:91308/2‑68 (MQ=255) tCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcaccac > 1:1764363/1‑68 (MQ=255) tCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAAcaccac > 1:3067133/1‑68 (MQ=255) ccATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACcaca < 1:4667810/68‑1 (MQ=255) ccATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACcaca < 1:3853861/68‑1 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCCAAAtta > 1:804359/1‑67 (MQ=14) cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGctc > 1:3763518/1‑68 (MQ=255) aGATGACAAACATGATCTCATATCAGGGACTTGTTCTCACCTTCCCTAGAACACCACAATTTCGctct < 1:4463389/68‑1 (MQ=255) tGACAAACATGTTCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCtctctc < 1:1793151/68‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg < 1:442963/68‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg < 1:2594404/68‑1 (MQ=255) gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCg < 1:537604/68‑1 (MQ=255) aCAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCCTAGAACACCACAATTTCGCTCTCTCgg > 1:4698125/1‑68 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGc < 1:1411627/68‑1 (MQ=255) tGATCTCATATCAGGGACTTCTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGcc > 1:3187236/1‑67 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACt < 1:2321548/68‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACt < 1:4483553/68‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACt < 1:3511033/68‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACt < 1:4401103/68‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTc > 1:334109/1‑68 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTc > 1:4599141/1‑68 (MQ=255) tatCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTcaca > 1:1845573/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:1042288/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:1221702/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:94636/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:1474007/1‑68 (MQ=255) atCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAg > 1:100722/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:4241875/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc < 1:439707/68‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc < 1:226391/68‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:3822043/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:3621579/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:3449814/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc < 1:192155/68‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc < 1:1934234/68‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc < 1:543413/68‑1 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:221894/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:2529469/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAAATTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:960226/1‑68 (MQ=255) tCAGGGACTTGTTCGCACCATCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGc > 1:1549684/1‑68 (MQ=255) aGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCAt < 1:2740403/68‑1 (MQ=255) aCTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCaa > 1:164997/1‑68 (MQ=255) aCTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCaa > 1:1392891/1‑68 (MQ=255) cTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAAc < 1:2124111/68‑1 (MQ=255) gTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa < 1:3600322/68‑1 (MQ=255) gTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGa < 1:3162800/68‑1 (MQ=255) tCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAt > 1:386843/1‑68 (MQ=255) gCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAtgt > 1:3849918/1‑68 (MQ=255) cACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAtgtg < 1:4540870/68‑1 (MQ=255) cACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAAtgtg < 1:3346022/68‑1 (MQ=255) aCCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGa > 1:910774/1‑68 (MQ=255) ccTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGAc > 1:3884531/1‑68 (MQ=255) tCCCTAGAACACCACAATTTCGCTCTCTCGGTATGGCACTGTCACAGCATTCAACAGAATGTGACTTg < 1:2085736/68‑1 (MQ=255) | GATGAACCCTGTTCCATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCCTAGAACACCACAATTTCGCTCTCTCGGTAAGGCACTGTCACAGCATTCAACAGAATGTGACTTG > CP009273/2060767‑2060899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |