| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2060834 | NA (NA) | 4 (0.070) | 4/132 | 4.6 | 6.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3654548 = | 55 (1.000) | coding (775/3114 nt) | mdtF | anaerobic multidrug efflux transporter, ArcA‑regulated | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTA > CP009273/3654481‑3654615 | gCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGc > 1:2773760/1‑68 (MQ=255)gCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGc > 1:3054114/1‑68 (MQ=255)gCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGc > 1:324955/1‑68 (MQ=255) cAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCa < 1:1146808/68‑1 (MQ=255) tgACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCaa < 1:273491/67‑1 (MQ=255) aGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCaa < 1:315500/68‑1 (MQ=255) gACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAg > 1:1652307/1‑68 (MQ=255) aCGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGt < 1:613972/68‑1 (MQ=255) aCGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGt < 1:161142/68‑1 (MQ=255) cgcgTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtg > 1:947867/1‑68 (MQ=255) cgcgTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtg > 1:502364/1‑68 (MQ=255) cgcgTCTGCAAACGCCGGAAGAATATGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtg > 1:1399730/1‑68 (MQ=255) gcgTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtgc < 1:2954554/68‑1 (MQ=255) tCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtgctgc < 1:1593727/68‑1 (MQ=255) tCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtgctgc < 1:2592635/68‑1 (MQ=255) tCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtgctgc < 1:1080798/68‑1 (MQ=255) gCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtgctgctgc < 1:3952323/68‑1 (MQ=255) gCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtgctgctgc < 1:691363/68‑1 (MQ=255) gCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGtgctgctgc < 1:1032452/68‑1 (MQ=255) gCAAACGCCGGAAGAAGTTGGCAAATTCCTGTTGAAAGTTCCGCAAGATGGTTCGCAAGtgctgatgc > 1:3680153/1‑68 (MQ=38) aCGCCGGAAGAATTTAGCAAAATGCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGa > 1:956741/1‑68 (MQ=255) cGCCGGAAGAATTTGGCAAAATCCTGTAGAAAGTTCAGCAAGATGGATCGCAAGTGCTGCTGCGTgct > 1:2568921/1‑66 (MQ=38) ccGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGt > 1:208654/1‑68 (MQ=255) aaTTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGtcgctcgc < 1:4207771/68‑1 (MQ=255) tttGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGt > 1:894362/1‑68 (MQ=255) gCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGaa < 1:2868016/68‑1 (MQ=255) ccTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTgggg < 1:362565/68‑1 (MQ=255) tGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGaa > 1:4067631/1‑68 (MQ=255) tGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGaa > 1:1520501/1‑68 (MQ=255) gAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAg < 1:1282082/68‑1 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGGGTCGAACTTGGGGCGGAAgt < 1:3370753/68‑2 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGTGGCGGATGa > 1:1128237/1‑68 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGa < 1:1660033/68‑1 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGa < 1:1505914/68‑1 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGa < 1:41851/68‑1 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGa < 1:1876735/68‑1 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGa > 1:2591363/1‑68 (MQ=255) aaaGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGa < 1:267089/68‑1 (MQ=255) gagtCAGCAAGTTGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGatt < 1:2451109/65‑1 (MQ=255) aGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGatt < 1:1698557/68‑1 (MQ=255) aGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGatt < 1:2470489/68‑1 (MQ=255) aGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGatt < 1:2768071/68‑1 (MQ=255) aGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGatt < 1:1489257/68‑1 (MQ=255) gCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCa < 1:361866/68‑1 (MQ=255) tGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTgg > 1:2205865/1‑68 (MQ=255) tcccAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg < 1:4720692/65‑1 (MQ=255) tCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg < 1:3165133/68‑1 (MQ=255) tCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg < 1:2571249/68‑1 (MQ=255) tCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg > 1:839420/1‑68 (MQ=255) tCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg < 1:600006/68‑1 (MQ=255) tCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg < 1:4709450/68‑1 (MQ=255) tCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg < 1:4494160/68‑1 (MQ=255) tCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACg < 1:40823/68‑1 (MQ=255) gCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCt < 1:2989378/68‑1 (MQ=255) gCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCt < 1:1148666/68‑1 (MQ=255) gCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCt < 1:2041238/68‑1 (MQ=255) ccAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCt < 1:3747735/67‑1 (MQ=255) cAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCta < 1:4343932/68‑1 (MQ=255) | GCAGACGCGTCTGCAAACGCCGGAAGAATTTGGCAAAATCCTGTTGAAAGTTCAGCAAGATGGTTCGCAAGTGCTGCTGCGTGATGTCGCTCGCGTCGAACTTGGGGCGGAAGATTATTCCACCGTGGCACGCTA > CP009273/3654481‑3654615 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |