| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 9 (0.160) | 61 (1.280) | 33/116 | 0.1 | 89.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 7 (0.150) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
Only 100 of 143 total aligned reads displayed.
AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAA > CP009273/4532432‑4532562 | tacactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatt < 1:1168896‑M1/1‑1 (MQ=255) acactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:4154403‑M1/2‑1 (MQ=255) acactttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacattt < 1:2975864‑M1/2‑1 (MQ=255) aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTG > 1:1696805‑M1/1‑68 (MQ=255) actttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTgg < 1:570318‑M1/4‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:3537780‑M1/64‑68 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:4245597‑M1/64‑68 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:1555446‑M1/64‑68 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:4700753‑M1/64‑68 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:1274549‑M1/64‑68 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg < 1:54996‑M1/5‑1 (MQ=255) ctttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTggg > 1:2314046‑M1/64‑68 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG < 1:4593573‑M1/68‑1 (MQ=255) agagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGG > 1:2730870‑M1/1‑68 (MQ=255) ttgttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGc < 1:484751‑M1/7‑1 (MQ=255) gttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCa < 1:1887580‑M1/9‑1 (MQ=255) ttttgtaaacgagtttgactgccaacactgcactcttttcccccaaaagttgaaacatTTGGGGCCaa > 1:3859492‑M1/59‑68 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:492923‑M1/59‑68 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:4172755‑M1/59‑68 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCaa > 1:3180331‑M1/59‑68 (MQ=255) ttttgtaaacgagtttgactgccaacactgcacagttatcccccaaaagatgaaacatTTGGGGCCaa < 1:3097495‑M1/10‑1 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCaa > 1:4014421/1‑68 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:4386166‑M1/68‑2 (MQ=255) agagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAt < 1:1007790‑M1/68‑2 (MQ=255) ttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc > 1:156969‑M1/57‑68 (MQ=255) ttgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAAc < 1:1016535‑M1/12‑1 (MQ=255) tgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACt > 1:3861800‑M1/56‑68 (MQ=255) tgtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACt > 1:585177‑M1/56‑68 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCTtttt > 1:328581‑M1/1‑64 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAtttt > 1:2702320‑M1/1‑64 (MQ=255) ggTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACt > 1:2205594/1‑68 (MQ=255) gtaaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTg > 1:1474167‑M1/55‑68 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga < 1:1750111‑M1/68‑7 (MQ=255) tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttga > 1:269552‑M1/1‑62 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:4053440‑M1/54‑68 (MQ=255) taaacgagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGt > 1:3214954‑M1/54‑68 (MQ=255) tGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgact < 1:2569847‑M1/68‑9 (MQ=255) aacgagtttgacagccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTcc > 1:3560969‑M1/52‑68 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:1788389‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:3612393‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:4456468‑M1/68‑12 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:3305729‑M1/1‑57 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat < 1:4571722‑M1/68‑12 (MQ=255) tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcat > 1:1512037‑M1/1‑57 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTTGGGCCAAACTGTCCata > 1:4196431‑M1/49‑68 (MQ=255) gagtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCata > 1:4336544‑M1/49‑68 (MQ=255) gagtttgactgccaacactgcacgttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:1093042‑M1/48‑68 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCatat > 1:1948978‑M1/48‑68 (MQ=255) agtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACACTCCatat < 1:3293635‑M1/21‑1 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc > 1:3121154‑M1/47‑68 (MQ=255) gtttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATc > 1:2520436‑M1/47‑68 (MQ=255) ttgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:625504‑M1/45‑68 (MQ=255) gtgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCat > 1:642788‑M1/45‑68 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:2751362‑M1/44‑68 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:440939‑M1/44‑68 (MQ=255) tgactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCata > 1:434173‑M1/44‑68 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg > 1:3995475‑M1/1‑52 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg < 1:703979‑M1/68‑17 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg < 1:1826261‑M1/68‑17 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagagg < 1:861802‑M1/68‑17 (MQ=255) cTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCata > 1:3050871/1‑68 (MQ=255) gactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataa < 1:3816146‑M1/26‑1 (MQ=255) gactgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataa < 1:357439‑M1/26‑1 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:3031104‑M1/27‑1 (MQ=255) actgccaacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCataaa < 1:4434125‑M1/27‑1 (MQ=255) caacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:1730946‑M1/37‑68 (MQ=255) caacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGt > 1:2926900‑M1/37‑68 (MQ=255) aacactgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGtt < 1:2003199‑M1/33‑1 (MQ=255) taaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcg < 1:3626199‑M1/68‑28 (MQ=255) actgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACg < 1:1851555‑M1/36‑1 (MQ=255) ctgcacagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGt < 1:4093270‑M1/37‑1 (MQ=255) aaaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgg < 1:3262122‑M1/68‑29 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggc > 1:1179705‑M1/1‑39 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcgga > 1:897920‑M1/1‑39 (MQ=255) aaGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCTTAAATAAGTTACGTa > 1:3312743/1‑68 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACGATTGGGGACAttttgactcatagaggaaagcgtcgcggac > 1:3508037‑M1/1‑38 (MQ=255) aGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggac > 1:3509134‑M1/1‑38 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:2587843‑M1/41‑1 (MQ=255) acagttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:2136013‑M1/41‑1 (MQ=255) acagttttcccccaaaagatgaaacatCTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAttt < 1:2305896‑M1/41‑1 (MQ=255) gttttcccccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt < 1:4065781‑M1/44‑1 (MQ=255) aaaaaaCAAATAAATACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaact < 1:3041581‑M1/68‑36 (MQ=255) tttcccccaaaagatgaaacatTTGGGGCCAAACAGTCCATATCATAAATAAGTTACGTATTTTTtct < 1:3798478‑M1/46‑1 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATCTCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:1127673‑M1/18‑68 (MQ=255) cccaaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGc > 1:334894‑M1/18‑68 (MQ=255) aaataaatACAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcag < 1:243219‑M1/68‑43 (MQ=255) aataaataCAATACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagt < 1:300223‑M1/68‑44 (MQ=255) aaaagatgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATa > 1:2793046‑M1/15‑68 (MQ=255) atgaaacatTTGGGGCCAAACTGTCCATATCATAAATCAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:3376338‑M1/10‑68 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:2627693‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttg > 1:434744‑M1/1‑18 (MQ=255) aCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat > 1:374458/1‑68 (MQ=255) tgaaacatTTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAata > 1:478230‑M1/9‑68 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:1741901‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:795452‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:2672148‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:1133449‑M1/1‑13 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:527749‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc < 1:2155111‑M1/68‑56 (MQ=255) aCAATTGGGGCCAttttgactcatagaggaaagcatcgcggacaaactttttcagtttatttgttggc > 1:1675404‑M1/1‑13 (MQ=255) | AAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAA > CP009273/4532432‑4532562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |