| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4532499 = | 9 (0.160) | 61 (1.280) | 33/116 | 0.1 | 89.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 7 (0.150) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
GCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAC > CP009273/4532749‑4532880 | ttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGt < 1:2250784‑M2/4‑1 (MQ=255)gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt < 1:1027013/68‑1 (MQ=255)gCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGt > 1:2313193/1‑68 (MQ=255)gCCAACAAATAAACTGAAAAAGATTGTCCGAGAAGCTTTCCTCTATGAGACAAAAAGGCCCCAAATGt > 1:1268790/1‑68 (MQ=255) taatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGtt < 1:3339928‑M2/5‑1 (MQ=255) tatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCa > 1:478230‑M2/61‑68 (MQ=255) atttttatgcttgagaaaaaatacgtaactgatttatgatatggacagtttggccccaaATGTTTCAt > 1:3376338‑M2/60‑68 (MQ=255) tatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtttt > 1:2793046‑M2/55‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggg > 1:334894‑M2/52‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTggg > 1:3932306‑M2/52‑68 (MQ=255) gcttgagaaaaaatacgtaacttatttatgagatggacagtttggccccaaATGTTTCATCTTTTggg > 1:1127673‑M2/52‑68 (MQ=255) cttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTgggg > 1:3387621‑M2/51‑68 (MQ=255) agaaaaaatacgtaacttatttatgatatggactgtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:3798478‑M2/22‑1 (MQ=255) agaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGaaa < 1:3737421‑M2/22‑1 (MQ=255) aaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAc < 1:4065781‑M2/24‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccagATGTTTCATCTTTTGGGGGAAAACtgt < 1:2305896‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:2136013‑M2/27‑1 (MQ=255) aaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgt < 1:2587843‑M2/27‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:417584‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:4093270‑M2/31‑1 (MQ=255) acgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAg < 1:619950‑M2/31‑1 (MQ=255) cgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgt < 1:1851555‑M2/32‑1 (MQ=255) ttaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAgtg < 1:2343677‑M2/33‑1 (MQ=255) aacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGtt < 1:2003199‑M2/35‑1 (MQ=255) acttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 1:1730946‑M2/33‑68 (MQ=255) acttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 1:2926900‑M2/33‑68 (MQ=255) acttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTg > 1:1724868‑M2/33‑68 (MQ=255) acttatttatgatatggacactttggccccaaATGTTTCATCTTTTGGGGGAAAACTGAGCAGTGTTg > 1:442073‑M2/33‑68 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 1:3031104‑M2/41‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt < 1:4434125‑M2/41‑1 (MQ=255) ttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc < 1:357439‑M2/42‑1 (MQ=255) ttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc < 1:3816146‑M2/42‑1 (MQ=255) tatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 1:2751362‑M2/26‑68 (MQ=255) tatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 1:434173‑M2/26‑68 (MQ=255) tatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCa > 1:440939‑M2/26‑68 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTcac > 1:642788‑M2/25‑67 (MQ=255) atgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa > 1:625504‑M2/25‑68 (MQ=255) tctATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaaa > 1:1620420/1‑68 (MQ=255) gatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:2520436‑M2/23‑68 (MQ=255) gatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc > 1:3121154‑M2/23‑68 (MQ=255) atatggagtgtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt < 1:3293635‑M2/47‑1 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:1948978‑M2/22‑68 (MQ=255) atatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAAC‑GTGCAGTGTTGGCAGTCAAACTc > 1:1093042‑M2/22‑68 (MQ=255) tatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc > 1:4336544‑M2/21‑68 (MQ=255) tatggacagtttggcccaaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTc > 1:4196431‑M2/21‑68 (MQ=255) tGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 1:1985732/68‑1 (MQ=255) gAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGt > 1:1826212/1‑68 (MQ=255) ggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCTGTCAAACTCGtt > 1:3560969‑M2/18‑68 (MQ=255) gacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGttt < 1:25860‑M2/52‑1 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:4362017‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:4053440‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:3214954‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:3548339‑M2/16‑68 (MQ=255) acagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa > 1:1839669‑M2/16‑68 (MQ=255) cagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTac > 1:1474167‑M2/15‑68 (MQ=255) agtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca > 1:585177‑M2/14‑68 (MQ=255) agtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTaca > 1:3861800‑M2/14‑68 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa < 1:1016535‑M2/56‑1 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaa > 1:156969‑M2/13‑68 (MQ=255) tttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaa < 1:1126207‑M2/57‑1 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGATAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 1:3097495‑M2/58‑1 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAATCTCGTTTacaaaa > 1:986692‑M2/11‑68 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:4172755‑M2/11‑68 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:2151599‑M2/11‑68 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:3180331‑M2/11‑68 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:492923‑M2/11‑68 (MQ=255) ttggccccaaATGTTTCAACTTTTGGGGGAAAAGAGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:3859492‑M2/11‑68 (MQ=255) aTGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa > 1:331095/1‑68 (MQ=255) tggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaac < 1:1887580‑M2/59‑1 (MQ=255) ggcccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:4318970‑M2/61‑1 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa < 1:484751‑M2/61‑1 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:2314046‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:3537780‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:1274549‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg < 1:54996‑M2/63‑1 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:4700753‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:1555446‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:1608677‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:2955550‑M2/6‑68 (MQ=255) cccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg > 1:4245597‑M2/6‑68 (MQ=255) agcaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg < 1:1554201‑M2/63‑1 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgt < 1:570318‑M2/64‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:2975864‑M2/66‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:533064‑M2/66‑1 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAgtgt < 1:4154403‑M2/66‑1 (MQ=255) aATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTa < 1:1168896‑M2/67‑1 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAc > 1:1498477/1‑68 (MQ=255) aTGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAc > 1:2942766/1‑68 (MQ=255) | GCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAC > CP009273/4532749‑4532880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |