| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 53 (0.760) | 132 (1.890) | 47/134 | 0.0 | 71.4% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
Only 100 of 132 total aligned reads displayed.
TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/360170‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < CP009273/360286‑360222 TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTA < 1:5027776/68‑1TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTA < 1:5768973/68‑1 GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAAT < 1:6105639/68‑1 ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAGTTC > 1:4357769/1‑68 ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTC > 1:5046939/1‑68 ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTC > 1:4236119/1‑68 CGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACTCCCGCCATAAACTGCCAGGAATTAATTCC < 1:4353172/68‑1 CGTTGCGAAGCAACGGCCCGGAGGGGGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCC < 1:82439/68‑1 GCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCcg > 1:5060328/1‑66 CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGG < 1:2197968/68‑1 CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGG < 1:3991151/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:1409099/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:577515/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:2871918/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:1911624/68‑1 AAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCA < 1:5662576/68‑1 GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 1:5459665/1‑68 GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 1:5363849/1‑68 GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 1:276822/1‑68 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATCAACTGCCAGGACTTAATTCCCCAGGCATCAA < 1:1204671/68‑1 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGTTATTAATTCCCCAGGCATCAA < 1:5145839/68‑1 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAA < 1:5318708/68‑1 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAA > 1:1335209/1‑68 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAA < 1:2841525/68‑1 AACGGCCCGGAGGGTGGCGGGCAGGACGCACGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAA > 1:1464273/1‑68 ACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAA < 1:4579880/68‑1 ACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAA < 1:5273202/68‑1 ACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAA < 1:4273196/68‑1 ctGCCCTGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAAT < 1:6068867/66‑1 CGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAAT < 1:5891741/68‑1 GGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATA > 1:1002495/1‑68 CCGGCGGGTGTCGCGCAGGACGCCCGCCTTAAACAGCCAGGAATTAATTCCCCAGGCATCAAATAAAA < 1:3838927/68‑1 CGGAGGGTGGCGGGCAGGACTCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAAC < 1:2341629/68‑1 GAGGGTGGCGGGCAGGAAGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGA < 1:3868977/68‑1 AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTATTTCCCCTTGCATCAAATAAAACGAA > 1:925492/1‑68 GGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAA > 1:5123400/1‑68 GGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAG > 1:1105639/1‑68 TGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGC < 1:1277756/68‑1 GGCGGGCAGGACGCCCGCCATAAACTGCCAGGATTTAATTCCCCAGGCATCAAATAAAACGAAAGGCT > 1:4946395/1‑68 GGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCACCAGGCATCAAATAAAACGAAAGGCTCAG < 1:1967870/68‑1 GGGCAGGACGCCCGCCATAAACAGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAG > 1:3283683/1‑68 GGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGT < 1:5405011/68‑1 GGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGT < 1:3455671/68‑1 gctGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:2258525/65‑1 GCAGGACGCCCGCCATAAACTGCCAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:1150576/68‑1 GCAGGACGCCCGCCATAAACTGCCAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:4977170/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGGATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:2612223/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:2191449/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:3281676/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:1546290/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:4504504/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:1373326/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:1308369/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:769284/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:3881482/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:3061059/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:3801538/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:3476107/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTACCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:6172597/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAAATAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:2093544/68‑1 GCAGGACGCCCGCCATAAACTCCGATTAAAAAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:6044722/68‑1 GCAGGACGCCCGCCATAAACTCCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:5253753/68‑1 ACGTCCGCCATAAACAGCGAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGACAG < 1:5437539/68‑1 ACGCCCGCCATAAACTGCCAGGAATTAATTCGCCATGCATCAAATAAAACGAAAGGCTCAGACGAAAG > 1:255706/1‑68 ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG < 1:2197008/68‑1 ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCAACAAATAAAACGAAAGGCTCAGTGGAAAG > 1:5828008/1‑68 CGCCCGCCATAAACTGCCAGGAATTTATTCCCCCGGCATCAAATAAAACGAAAGGCTCGGTCGAAAGA > 1:1624916/1‑68 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA > 1:2674306/1‑68 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA < 1:1058932/68‑1 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA < 1:1152148/68‑1 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA > 1:6196132/1‑68 GCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGAC < 1:1756075/68‑1 CCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGcca > 1:248672/1‑65 GCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG < 1:4014276/68‑1 CATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCC < 1:274547/68‑1 tTAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT < 1:1697065/67‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGACAGGCTCAGTCGAAAGACTGGGCCTTTCG < 1:5205298/68‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:2936680/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:4137673/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG < 1:5081315/68‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:1034064/1‑68 ACTCCCAGGAATAAAATCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG < 1:2170953/68‑1 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 1:4935756/1‑68 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 1:4559619/1‑68 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT < 1:2564519/68‑1 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 1:5821146/1‑68 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 1:2260813/1‑68 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTGTCGT > 1:147468/1‑68 CTGCCACGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT < 1:2103678/68‑1 GCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTT > 1:2716823/1‑68 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA > 1:1014032/1‑68 AGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAT < 1:3849286/68‑1 GAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCT < 1:2007695/68‑1 AATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTG > 1:5554526/1‑68 ATTAATTGCCCAGGCATCAAATAAACCGAAAGGCTCACTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:2643411/68‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:599374/68‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT > 1:5513689/1‑68 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:4568735/68‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:4311154/68‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT > 1:2236425/1‑68 TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/360170‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < CP009273/360286‑360222 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |