| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3576788 = | NA (NA) | 69 (0.990) | 33/134 | 0.3 | 98.6% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | CP009273 | = 4209762 | 1 (0.010) | coding (1239/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576853‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < CP009273/4209762‑4209696 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTTAATCAGTAAGTTGGCAGCATCACCAt > 1:6046410/1‑67ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA > 1:3481162/1‑68ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA > 1:2359041/1‑68ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA > 1:691617/1‑68ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAA > 1:1631490/1‑68 acAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGA < 1:2495373/66‑1 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGC < 1:2972067/68‑1 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCG > 1:729267/1‑68 CACTGTAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGA < 1:3963990/68‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAAT > 1:353695/1‑68 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCAC > 1:2919492/1‑68 AGCACCTCAAAAACACCATCATCCACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA < 1:5692514/68‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCCCCAAGATGGCGAATCACA > 1:1812298/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA > 1:1652967/1‑68 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACA > 1:6123/1‑68 ACCTCAAAAACACCATCATACACTAAGTCAGTAAGTTGGCAGCATCACCAAGATGGCGATTCACAATT > 1:4989461/1‑68 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATT > 1:6174670/1‑68 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGACGAATCACAATT > 1:3759335/1‑68 AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCG < 1:1337649/68‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCC > 1:4281580/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCC > 1:4343709/1‑68 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCC > 1:4521730/1‑68 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGA > 1:689494/1‑68 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAG > 1:5761035/1‑68 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAG > 1:5377216/1‑68 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAG > 1:1437811/1‑68 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGA < 1:4035389/68‑1 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATC < 1:5163224/68‑1 ATACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGT > 1:5046892/1‑68 ACACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGA > 1:2263864/1‑68 ACTAAATCAGTAAGTTGGCAGCATCTCCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:2990899/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCCCAATTTGTTCGCCGAGATCGGTGATT > 1:3549670/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:3877418/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:5774774/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:2773620/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATT > 1:4573257/1‑68 ACTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGGGATT > 1:5535632/1‑68 ACTAAATCAGTAAGTTGGCAGCATAACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGAat > 1:3349357/1‑66 CTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGCTCGGTAATTT > 1:247700/1‑68 CTAAATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTT > 1:4127272/1‑68 CTAAATCAGTAAGTTGGCAGCATCACAAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTT > 1:4290678/1‑68 ATCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTC > 1:609204/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:2293918/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:2644169/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:4582478/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:4770917/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:703629/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:6110809/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCC > 1:1423105/1‑68 TCAGTAAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGAGCGGTGATTTTTTCC > 1:4004039/1‑68 TCAGTAAGTAGGCAGCATCACCAAGATGGCCAATCACAATATGTTCGCCGAGATCGGTGATTTTTTCC > 1:863339/1‑68 TAAGTTGGCAGCATCACCAAGATGGCGATTCACAATTTGTTCGCCGAGATCGGTGATTTTTTACGCTG > 1:5650796/1‑68 AAGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGC < 1:2609404/68‑1 AGTTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCT > 1:1540721/1‑68 AGTTGGCAGCATCACCAAGATGGCGAATCACAATATGTACGCCGAGATCGGTGATTTTTTCCGCTGCT > 1:3969272/1‑68 TTGGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTC < 1:5473634/68‑1 GGCAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCT > 1:4349957/1‑68 CAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTGCTGA > 1:1258247/1‑68 CAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGA > 1:3558937/1‑68 CAGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGA > 1:3468402/1‑68 cGCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTACCGCTGCTTCCTGAA < 1:1972962/67‑1 GCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGCTCGGTGATTTTTTCCGCTGCTTCCTGAAG > 1:5156966/1‑68 GCATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAG > 1:5076157/1‑68 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA < 1:3027846/68‑1 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA > 1:4244379/1‑68 ATCACCAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCA > 1:1338629/1‑68 CAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT > 1:3488121/1‑68 CAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT > 1:6181573/1‑68 CAAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < 1:3661230/68‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3576853‑3576788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGATGGCGAATCACAATTTGTTCGCCGAGATCGGTGATTTTTTCCGCTGCTTCCTGAAGCAGTAAT < CP009273/4209762‑4209696 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |