| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3576788 = | NA (NA) | 69 (0.990) | 33/134 | 0.3 | 98.6% | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | CP009273 | = 4209762 | 1 (0.010) | coding (1239/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAGGTCAGCAGTTGCGC > CP009273/4209696‑4209828 | aatACTGCTTCAGGGAGCAGCGGAAAAATTCGCCGATCTCGGCGAACAATTTGTGATTCGCCATCttg > 1:5637160/3‑67 (MQ=255)aTTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTg < 1:3661230‑M2/68‑2 (MQ=255)aTTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTg > 1:6181573‑M2/1‑67 (MQ=255)aTTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTg > 1:3488121‑M2/1‑67 (MQ=255) tGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgat > 1:1338629‑M2/1‑62 (MQ=255) tGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgat < 1:3027846‑M2/68‑7 (MQ=255) tGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgat > 1:4244379‑M2/1‑62 (MQ=255) cTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgc > 1:5076157‑M2/1‑60 (MQ=255) cTTCAGGAAGCAGCGGAAAAAATCACCGAGCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgc > 1:5156966‑M2/1‑60 (MQ=255) ttCAGGAAGCAGCGGTAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgcg < 1:1972962‑M2/68‑10 (MQ=255) tCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctg > 1:3468402‑M2/1‑58 (MQ=255) tCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctg > 1:3558937‑M2/1‑58 (MQ=255) tCAGCAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctg > 1:1258247‑M2/1‑58 (MQ=255) aGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgcc > 1:4349957‑M2/1‑56 (MQ=255) gAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaa < 1:5473634‑M2/68‑15 (MQ=255) agcagcGGAAAAAATCACCGATCTCGGCGTACATATTGTGATTCGCCATCTTggtgatgctgccaact > 1:3969272‑M2/1‑52 (MQ=255) agcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaact > 1:1540721‑M2/1‑52 (MQ=255) gcagcGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaactt < 1:2609404‑M2/68‑18 (MQ=255) cagcGTAAAAAATCACCGATCTCGGCGAACAAATTGTGAATCGCCATCTTggtgatgctgccaactta > 1:5650796‑M2/1‑50 (MQ=255) ggAAAAAATCACCGCTCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:4004039‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACATATTGTGATTGGCCATCTTggtgatgctgcctacttactga > 1:863339‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:4582478‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:4770917‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:1423105‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:703629‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:2644169‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:6110809‑M2/1‑46 (MQ=255) ggAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactga > 1:2293918‑M2/1‑46 (MQ=255) gAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgat > 1:609204‑M2/1‑45 (MQ=255) aaaTTACCGAGCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttag > 1:247700‑M2/1‑41 (MQ=255) aaaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTtgtgatgctgccaacttactgatttag > 1:4290678‑M2/1‑41 (MQ=255) aaaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttag > 1:4127272‑M2/1‑41 (MQ=255) attcaCCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggttatgctgccaacttactgatttagt > 1:3349357‑M2/3‑40 (MQ=255) aaTCCCCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:5535632‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:3877418‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:5774774‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:2773620‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:4573257‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggagatgctgccaacttactgatttagt > 1:2990899‑M2/1‑40 (MQ=255) aaTCACCGATCTCGGCGAACAAATTGGGATTCGCCATCTTggtgatgctgccaacttactgatttagt > 1:3549670‑M2/1‑40 (MQ=255) tCACCGATCTCGGCGAACAAATTGTGCTTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAat < 1:5907769/68‑1 (MQ=255) tCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgt > 1:2263864‑M2/1‑38 (MQ=255) aCCGATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtat > 1:5046892‑M2/1‑36 (MQ=255) gATCTCGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgat < 1:5163224‑M2/68‑36 (MQ=255) tctcGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatgg < 1:4035389‑M2/68‑38 (MQ=255) ctcGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggt > 1:5377216‑M2/1‑30 (MQ=255) ctcGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggt > 1:1437811‑M2/1‑30 (MQ=255) ctcGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggt > 1:5761035‑M2/1‑30 (MQ=255) tcGGCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtg > 1:689494‑M2/1‑29 (MQ=255) ggCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:4521730‑M2/1‑27 (MQ=255) ggCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:4343709‑M2/1‑27 (MQ=255) ggCGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtt > 1:4281580‑M2/1‑27 (MQ=255) cGAACAAATTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttt < 1:1337649‑M2/68‑44 (MQ=255) aaTTGTGATTCGTCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 1:3759335‑M2/1‑19 (MQ=255) aaTTGTGATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt > 1:6174670‑M2/1‑19 (MQ=255) aaTTGTGAATCGCCATCTTggtgatgctgccaacttactgacttagtgtatgatggtgtttttgaggt > 1:4989461‑M2/1‑19 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:1652967‑M2/1‑16 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:6123‑M2/1‑16 (MQ=255) tgtgATTCGCCATCTTggtgatgctgccaacttactgatttagtggatgatggtgtttttgaggtgct < 1:5692514‑M2/68‑53 (MQ=255) tgtgATTCGCCATCTTggggatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgct > 1:1812298‑M2/1‑16 (MQ=255) gtgATTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc > 1:2919492‑M2/1‑15 (MQ=255) aTTCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccag > 1:353695‑M2/1‑12 (MQ=255) tCGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctacagtg < 1:3963990‑M2/68‑59 (MQ=255) cGCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg > 1:729267‑M2/1‑9 (MQ=255) gCCATCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggc < 1:2972067‑M2/68‑61 (MQ=255) tCTTggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttgt < 1:2495373‑M2/68‑65 (MQ=255) ttggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:2359041‑M2/1‑2 (MQ=255) ttggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:1631490‑M2/1‑2 (MQ=255) ttggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:3481162‑M2/1‑2 (MQ=255) ttggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:691617‑M2/1‑2 (MQ=255) atggtgatgctgccaacttactgattaagtgtatgatggtgtttttgaggtgctccagtggcttctgt > 1:6046410‑M2/2‑2 (MQ=255) | ATTACTGCTTCAGGAAGCAGCGGAAAAAATCACCGATCTCGGCGAACAAATTGTGATTCGCCATCTTTATATTGAGCGGCGGATGGTGCCGCTCAATATCTGGCTGGAACAAGTGGAAGGTCAGCAGTTGCGC > CP009273/4209696‑4209828 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |