| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3577555 | NA (NA) | 94 (1.340) | 43/134 | 0.1 | 100% | intergenic (+15/‑1) | insB1/yrhA | IS1 transposase B/pseudogene, interrupted by IS1E |
| ? | CP009273 | 4232204 = | 0 (0.000) | intergenic (‑22/+350) | xylE/malG | D‑xylose transporter/maltose transporter subunit | |||||
TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3577491‑3577555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > CP009273/4232204‑4232270 TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTG > 1:1920851/1‑68TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTG > 1:4396322/1‑68 GCATTACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATTAGTTGGAGTCATTACCCTGA < 1:98537/68‑1 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGA < 1:3112157/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGGTC > 1:4193391/1‑68 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:5750060/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:4809871/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:4775115/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC > 1:3084750/1‑68 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:1934799/68‑1 ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATC < 1:3340809/68‑1 GACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTT < 1:5540711/68‑1 aagGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTA > 1:3728215/4‑68 GTCATCGGGCATTATCTGAACATAAATCACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCA > 1:3123237/1‑68 GTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCA > 1:4787040/1‑68 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:2373655/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:5298942/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:1629553/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:5608881/68‑1 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGT < 1:590558/68‑1 CGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCA < 1:4930375/68‑1 GGCATTATCCGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATT > 1:1687276/1‑68 CATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGA < 1:1387183/68‑1 CATAATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGA > 1:1340796/1‑68 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGAT < 1:4198268/68‑1 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGAT < 1:3756286/68‑1 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGAT > 1:4863959/1‑68 ATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGAT < 1:5100019/68‑1 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:2292295/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:2929527/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:4164647/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:1960650/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:3088655/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTG > 1:169831/1‑68 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTAACAGTGCATTGATGTTG > 1:725359/1‑68 AACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAAT > 1:1773875/1‑68 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT < 1:24920/68‑1 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT < 1:5584135/68‑1 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT > 1:929014/1‑68 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT < 1:1969346/68‑1 ACATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATT < 1:874381/68‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGT > 1:1803010/1‑68 ATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGT > 1:3813248/1‑68 ATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGT < 1:3254714/68‑1 ATAAAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGT < 1:6104473/68‑1 AAACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAG < 1:2608756/68‑1 ACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGATTTGTCAGGC > 1:2900092/1‑68 ACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGC > 1:3570389/1‑68 ACACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGC > 1:4779738/1‑68 ACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG < 1:4981279/68‑1 ACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG < 1:1160174/68‑1 ACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG < 1:214908/68‑1 ACTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAG > 1:1381614/1‑68 CTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGT < 1:3745281/68‑1 CTATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGT > 1:4622429/1‑68 TATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTT < 1:295238/68‑1 ATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTA > 1:1831195/1‑68 ATCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTA > 1:1632384/1‑68 TCAATAAGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAA > 1:320946/1‑68 ATAAGTGGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGC < 1:5630266/68‑1 AGTTGGAGTCATTACCCTGGTCTTTTATCAGTGCGTTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:1197638/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTTAGGCAAT > 1:5109921/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:4345025/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:5812178/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:30344/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:2761692/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAAT > 1:2270097/1‑68 AGTTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGACAGGCAGTTAAGGCAAa > 1:857053/1‑67 AGTTGGAGTCATTACCCTGATCTTTAATCAGTGCAATGATGTTGGAATTGTCAGGCAGTTAAGGCAAT < 1:2490673/68‑1 GTTGGAGGCCTTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATT < 1:2057767/68‑1 TTGGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGATTTGTCAGGCAGTTAAGGCAATTA > 1:4991400/1‑68 GGAGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATC > 1:1801434/1‑68 atTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT < 1:1784474/66‑1 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGTATTGTCAGGCAGTTAAGGCAATTATCAT < 1:3825435/68‑1 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT > 1:1110674/1‑68 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT > 1:5941340/1‑68 AGTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCAT < 1:3600638/68‑1 GTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATT > 1:4134145/1‑68 GTCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATT > 1:2894648/1‑68 TCATTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTT > 1:5123631/1‑68 TTACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTT > 1:693875/1‑68 TACCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTA < 1:4814715/68‑1 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACA > 1:4457061/1‑68 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACA < 1:5502445/68‑1 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACA > 1:6081394/1‑68 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACA > 1:4124395/1‑68 CCCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTATTTACA > 1:3646826/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTTCAA > 1:4137428/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > 1:2015166/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > 1:4282488/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > 1:2821436/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > 1:1790277/1‑68 CCTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > 1:3643433/1‑68 CCTGATCTTATATCAGTGCAGTGATGTTGGAATTGTCAGGCAGTTAAGGCATTTATCATTTTTTACAA > 1:233897/1‑68 TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3577491‑3577555‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGATCTTTTATCAGTGCATTGATGTTGGAATTGTCAGGCAGTTAAGGCAATTATCATTTTTTACAA > CP009273/4232204‑4232270 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |